Name: Streptomyces rameus DSM 41685
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16328

Type strain:

Species: Streptomyces rameus

Culture col. no.: DSM 41685, ATCC 21273, HUT 6618, IFO 16196, JCM 5064, KCC S-1064, KCTC 9767, NBRC 16196, NRRL B-16924, BCRC 12045, CGMCC 4.1763, IFO 15453, NBRC 15453

Strain history: KCC S-1064 <-- ATCC 21273 <-- Kyowa Hakko Kogyo Co., Ltd.; 154.

NCBI tax ID(s): 68261 (species)

SI-ID 92882

ATCC 21273, DSM 41685, IFO 16196, JCM 5064, CCRC 12045, HUT 6618, IFO 15453, NRRL B-16924, KCTC 9767, NBRC 15453, NBRC 16196, LMG 20326, BCRC 12045, CGMCC 4.1763

Other strains from Streptomyces rameus

S. rameus JCM 11574, ATCC 700861, IFO 3782, ... (type strain)

Section

Streptomyces rameus DSM 41685 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rameus**
	Full Scientific Name (LPSN)	Streptomyces rameus Shibata 1959 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19524]	Colony color	Brown
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 2

[Ref.: #19524]	Colony color	Green
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 3

[Ref.: #19524]	Colony color	Green
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 4

[Ref.: #19524]	Colony color	Green
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 5

[Ref.: #19524]	Colony color	Brown
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 6

[Ref.: #19524]	Colony color	Brown
[Ref.: #19524]	Incubation period	10-14 days
[Ref.: #19524]	Cultivation medium used	ISP 7

[Ref.: #19524]	Multicellular complex forming ability	yes
[Ref.: #19524]	Multicellular complex name	Aerial Mycelium
[Ref.: #19524]	Multicellular complex color	Grey
[Ref.: #19524]	Medium Name (multicellularity)	ISP 2

[Ref.: #19524]	Multicellular complex forming ability	yes
[Ref.: #19524]	Multicellular complex name	Aerial Mycelium
[Ref.: #19524]	Multicellular complex color	Grey
[Ref.: #19524]	Medium Name (multicellularity)	ISP 3

[Ref.: #19524]	Multicellular complex forming ability	yes
[Ref.: #19524]	Multicellular complex name	Aerial Mycelium
[Ref.: #19524]	Multicellular complex color	Grey
[Ref.: #19524]	Medium Name (multicellularity)	ISP 4

[Ref.: #19524]	Multicellular complex forming ability	yes
[Ref.: #19524]	Multicellular complex name	Aerial Mycelium
[Ref.: #19524]	Multicellular complex color	Grey
[Ref.: #19524]	Medium Name (multicellularity)	ISP 5

[Ref.: #19524]	Multicellular complex forming ability	no
[Ref.: #19524]	Medium Name (multicellularity)	ISP 6

[Ref.: #19524]	Multicellular complex forming ability	yes
[Ref.: #19524]	Multicellular complex name	Aerial Mycelium
[Ref.: #19524]	Multicellular complex color	Grey
[Ref.: #19524]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19524]

Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #19524]			optimum	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #19524]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19524]	Spore description	Formation of spore chains: spirales, spore surface: smooth
[Ref.: #19524]	Type of spore	spore
[Ref.: #19524]	Ability of spore formation	yes

[Ref.: #10468]	Name of produced compound	plant antiviral agent 84-B-3
[Ref.: #67770]	Name of produced compound	Anti-virus substance 84-B-3

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19524]		NaCl		maximum	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19524]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19524]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19524]	fructose ChEBI	-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19524]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19524]	mannitol ChEBI	-
[Ref.: #19524]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19524]	raffinose ChEBI	-
[Ref.: #19524]	rhamnose ChEBI	-
[Ref.: #19524]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19524]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19524]	381	+	-	-	-	-	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10468]	Sample type/isolated from	soil
[Ref.: #10468]	Geographic location (country and/or sea, region)	Tokyo, Setagaya-ku
[Ref.: #10468]	Country	Japan
[Ref.: #10468]	Country ISO 3 Code	JPN
[Ref.: #10468]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Setagaya-ku, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184679 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	67
Animal Samples	9
Plant Samples	2
Total Samples	78

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10468]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19524]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces rameus gene for 16S ribosomal RNA, partial sequence, strain: JCM 5064	D44433	120	ENA	68261 tax ID	*
[Ref.: #20218]	Streptomyces rameus strain KCTC 9767 16S ribosomal RNA gene, partial sequence	AY999821	1422	ENA	68261 tax ID	*
[Ref.: #20218]	Streptomyces rameus 16S rRNA gene, type strain LMG 20326	AJ781379	1479	ENA	68261 tax ID	*
[Ref.: #20218]	Streptomyces rameus gene for 16S rRNA, partial sequence, strain: NBRC 15453	AB184679	1474	ENA	68261 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces tricolor DSM 41685	GCA_021892415	contig	GenBank	68277 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces tricolor DSM 41685 NCBI: GCA_021892415.1
[Ref.: #69480]	flagellated	no	97.807	no
[Ref.: #69480]	gram-positive	yes	88.793	no
[Ref.: #69480]	anaerobic	no	99.321	no
[Ref.: #69480]	aerobic	yes	94.398	no
[Ref.: #69480]	halophile	no	93.856	no
[Ref.: #69480]	spore-forming	yes	95.53	yes
[Ref.: #69480]	motile	no	93.109	no
[Ref.: #69480]	glucose-ferment	no	91.56	no
[Ref.: #69480]	thermophile	no	98.098	yes
[Ref.: #69480]	glucose-util	yes	89.619	no

Availability in culture collections External links

[Ref.: #10468]

Culture collection no.

DSM 41685, ATCC 21273, HUT 6618, IFO 16196, JCM 5064, KCC S-1064, KCTC 9767, NBRC 16196, NRRL B-16924, BCRC 12045, CGMCC 4.1763, IFO 15453, NBRC 15453

[Ref.: #85384]

SI-ID 92882

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Strain NBRC (formerly IFO) 3782 is the type strain of Streptomyces rameus Shibata 1959. Opinion 76.	Judicial Commission Of The International Committee On Systematics Of Prokaryotes	Int J Syst Evol Microbiol	10.1099/ijs.0.63545-0	2005	*

References

#10468

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41685

#19524

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85384

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92882.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces tricolor DSM 41685

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