Name: Streptomyces ardesiacus DSM 40934
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16303

Type strain:

Species: Streptomyces ardesiacus

Culture col. no.: DSM 40934, CBS 100.56, ETH 24355, IPV 755, JCM 5815, NRRL B-1773, CGMCC 4.1682, IFO 15402, NBRC 15402, VTT E-991430

Strain history: E. M. H. Wellington <-- CBS 100.56 <-- E. Baldacci (IPV 755).

NCBI tax ID(s): 1956 (species)

SI-ID 49838

DSM 40934, JCM 5815, NRRL B-1773, IFO 15402, CBS 100.56, AS 4.1682, NBRC 15402, CGMCC 4.1682, VTT E-991430

Section

Streptomyces ardesiacus DSM 40934 is a spore-forming, mesophilic bacterium that was isolated from compost.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces ardesiacus**
	Full Scientific Name (LPSN)	Streptomyces ardesiacus (Baldacci et al. 1955) Komaki and Tamura 2020

	Synonym	"Actinomyces* diastaticus subsp. ardesiacus"*
	Synonym	Streptomyces diastaticus subsp. ardesiacus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.1

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9898]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9898]

Culture medium growth

[Ref.: #9898]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9898]

Culture medium composition

expand / minimize

[Ref.: #9898]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9898]

Culture medium growth

[Ref.: #9898]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9898]

Culture medium composition

expand / minimize

[Ref.: #9898]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #9898]

Culture medium growth

[Ref.: #9898]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9898]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9898]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9898]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9898]	Sample type/isolated from	compost
* marker position based on {}

Isolation sources categories

#Engineered

#Biodegradation

#Composting

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184653 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	5
Soil Samples	89
Animal Samples	58
Plant Samples	8
Total Samples	160

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9898]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces diastaticus subsp. ardesiacus gene for 16S rRNA, partial sequence, strain: NBRC 15402	AB184653	1464	ENA	285564 tax ID	*
[Ref.: #20218]	Streptomyces diastaticus subsp. ardesiacus strain NRRL B-1773 16S ribosomal RNA gene, partial sequence	DQ026631	1486	ENA	285564 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces ardesiacus NBRC 15402	GCA_003112575	contig	GenBank	285564 tax ID
[Ref.: #66792]	Streptomyces diastaticus subsp. ardesiacus strain NBRC 15402	285564.3	wgs	PATRIC	285564 tax ID	*

[Ref.: #67770]

GC-content

72.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces diastaticus subsp. ardesiacus strain NBRC 15402 PATRIC: 285564.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces diastaticus subsp. ardesiacus strain NBRC 15402 PATRIC: 285564.3
[Ref.: #69480]	motile	no	95.255	no
[Ref.: #69480]	gram-positive	yes	87.54	no
[Ref.: #69480]	anaerobic	no	99.361	no
[Ref.: #69480]	halophile	no	90.959	no
[Ref.: #69480]	spore-forming	yes	95.956	no
[Ref.: #69480]	glucose-util	yes	90.502	no
[Ref.: #69480]	flagellated	no	97.756	no
[Ref.: #69480]	aerobic	yes	95.298	no
[Ref.: #69480]	thermophile	no	98.038	yes
[Ref.: #69480]	glucose-ferment	no	89.729	no

Availability in culture collections External links

[Ref.: #9898]

Culture collection no.

DSM 40934, CBS 100.56, ETH 24355, IPV 755, JCM 5815, NRRL B-1773, CGMCC 4.1682, IFO 15402, NBRC 15402, VTT E-991430

[Ref.: #85360]

SI-ID 49838

References

#9898

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40934

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85360

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49838.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces diastaticus subsp. ardesiacus strain NBRC 15402

Streptomyces diastaticus subsp. ardesiacus strain NBRC 15402

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