Name: Mesorhizobium soli JCM 19897
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162660

Type strain:

Species: Mesorhizobium soli

Culture col. no.: JCM 19897, KACC 17916, KEMB 9005-153, LMG 29539

Strain history: J. Kim NHI-8.

NCBI tax ID(s): 1295366 (species)

Section

Mesorhizobium soli JCM 19897 is a mesophilic, Gram-negative bacterium that was isolated from Rhizosphere of Robinia pseudoacacia at Kyonggi Univ..

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Phyllobacteriaceae*
	Genus	*Mesorhizobium*
	Species	**Mesorhizobium soli**
	Full Scientific Name (LPSN)	Mesorhizobium soli Nguyen et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.979

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of Robinia pseudoacacia at Kyonggi Univ.
[Ref.: #67770]	Host species	Robinia pseudoacacia
[Ref.: #67770]	Geographic location (country and/or sea, region)	Suwon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC484966 (>99% sequence identity) for Mesorhizobium soli subclade from Microbeatlas

Aquatic Samples	56
Soil Samples	80
Animal Samples	18
Plant Samples	13
Total Samples	167

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mesorhizobium soli strain NHI-8 16S ribosomal RNA gene, partial sequence	KC484966	1416	ENA	1295366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mesorhizobium soli JCM 19897	GCA_003012705	contig	GenBank	1295366 tax ID	*
[Ref.: #66792]	Mesorhizobium soli strain JCM 19897	1295366.3	wgs	PATRIC	1295366 tax ID	*
[Ref.: #66792]	Mesorhizobium soli JCM 19897	2791355125	draft	JGI IMG/M	1295366 tax ID	*

[Ref.: #67770]

GC-content

64.38 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mesorhizobium soli strain JCM 19897 PATRIC: 1295366.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mesorhizobium soli strain JCM 19897 PATRIC: 1295366.3
[Ref.: #69480]	motile	yes	84.144	no
[Ref.: #69480]	gram-positive	no	97.657	no
[Ref.: #69480]	anaerobic	no	98.158	no
[Ref.: #69480]	aerobic	yes	94.431	no
[Ref.: #69480]	halophile	no	91.398	no
[Ref.: #69480]	spore-forming	no	94.872	no
[Ref.: #69480]	thermophile	no	97.165	yes
[Ref.: #69480]	glucose-util	yes	89.882	no
[Ref.: #69480]	flagellated	no	78.653	no
[Ref.: #69480]	glucose-ferment	no	89.317	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19897, KACC 17916, KEMB 9005-153, LMG 29539

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mesorhizobium soli sp. nov., a novel species isolated from the rhizosphere of Robinia pseudoacacia L. in South Korea by using a modified culture method.	Nguyen TM, Pham VH, Kim J	Antonie Van Leeuwenhoek	10.1007/s10482-015-0481-8	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Mesorhizobium soli strain JCM 19897

Mesorhizobium soli strain JCM 19897

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