Name: Pseudooceanicola flagellatus JCM 19803
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162615

Type strain:

Species: Pseudooceanicola flagellatus

Culture col. no.: JCM 19803, CGMCC 1.12664, LMG 27871

Strain history: Y.-Y. Huo DY470.

NCBI tax ID(s): 1387277 (species)

SI-ID 390710

LMG 27871, CGMCC 1.12664

Section

Pseudooceanicola flagellatus JCM 19803 is a mesophilic, Gram-negative bacterium that was isolated from Seawater collected from the Pacific Ocean.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudooceanicola*
	Species	**Pseudooceanicola flagellatus**
	Full Scientific Name (LPSN)	Pseudooceanicola flagellatus (Huo et al. 2014) Huang et al. 2018

	Synonym	"Pseudooceanicola* flagellatus"*
	Synonym	Primorskyibacter flagellatus
	Synonym	Oceanicola flagellatus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %91

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater collected from the Pacific Ocean
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF434118 (>99% sequence identity) for Pseudooceanicola flagellatus subclade from Microbeatlas

Aquatic Samples	65
Soil Samples
Animal Samples
Plant Samples
Total Samples	65

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Oceanicola flagellatus strain DY470 16S ribosomal RNA gene, partial sequence	KF434118	1381	ENA	1387277 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Primorskyibacter flagellatus CGMCC 1.12664	GCA_014638275	scaffold	GenBank	1387277 tax ID	*
[Ref.: #66792]	Pseudooceanicola flagellatus strain CGMCC 1.12664	1387277.6	wgs	PATRIC	1387277 tax ID	*

[Ref.: #67770]

GC-content

61.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudooceanicola flagellatus CGMCC 1.12664 NCBI: GCA_014638275.1
[Ref.: #69481]	spore-forming	no	91	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudooceanicola flagellatus CGMCC 1.12664 NCBI: GCA_014638275.1
[Ref.: #69480]	flagellated	no	80.754	no
[Ref.: #69480]	gram-positive	no	97.661	no
[Ref.: #69480]	anaerobic	no	98.229	no
[Ref.: #69480]	aerobic	yes	91.752	no
[Ref.: #69480]	halophile	yes	68.874	no
[Ref.: #69480]	spore-forming	no	96.301	no
[Ref.: #69480]	glucose-util	yes	80.302	no
[Ref.: #69480]	thermophile	no	97.324	yes
[Ref.: #69480]	motile	yes	62.645	no
[Ref.: #69480]	glucose-ferment	no	91.651	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19803, CGMCC 1.12664, LMG 27871

[Ref.: #113506]

SI-ID 390710

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015	*
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014	*
Phylogeny	Pseudooceanicola lipolyticus sp. nov., a marine alphaproteobacterium, reclassification of Oceanicola flagellatus as Pseudooceanicola flagellatus comb. nov. and emended description of the genus Pseudooceanicola.	Huang MM, Guo LL, Wu YH, Lai QL, Shao ZZ, Wang CS, Wu M, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002521	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113506

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390710.1 )

* These data were automatically processed and therefore are not curated

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Pseudooceanicola flagellatus CGMCC 1.12664

Pseudooceanicola flagellatus CGMCC 1.12664

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