Name: Pseudooceanicola antarcticus JCM 19802
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162614

Type strain:

Species: Pseudooceanicola antarcticus

Culture col. no.: JCM 19802, CGMCC 1.12662, LMG 27868

Strain history: Y.-Y. Huo Ar-45.

NCBI tax ID(s): 1247613 (species)

SI-ID 390708

LMG 27868, CGMCC 1.12662

Special Collections

Section

When using BacDive for research please cite our paper

Pseudooceanicola antarcticus JCM 19802 is a mesophilic, Gram-negative bacterium that was isolated from Seawater collected from the Antarctic Ocean.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudooceanicola*
	Species	**Pseudooceanicola antarcticus**
	Full Scientific Name (LPSN)	Pseudooceanicola antarcticus (Huo et al. 2014) Lai et al. 2015

Synonym

Oceanicola antarcticus

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98
[Ref.: #125439]	Gram stain	negative Confidence in %98.6

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Ability of spore formation	no Confidence in %90.76
[Ref.: #125439]	Ability of spore formation	no Confidence in %98.5

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater collected from the Antarctic Ocean
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudooceanicola antarcticus strain Ar-45 16S ribosomal RNA gene, partial sequence	JX844452	1423	GenBank ENA	1247613 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudooceanicola antarcticus CGMCC 1.12662	GCA_900215355	contig	GenBank ENA	1247613 tax ID	*
[Ref.: #66792]	Pseudooceanicola antarcticus strain CGMCC 1.12662	1247613.3	wgs	PATRIC	1247613 tax ID	*
[Ref.: #66792]	Pseudooceanicola antarcticus CGMCC 1.12662	2721755848	draft	JGI IMG/M	1247613 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudooceanicola antarcticus strain CGMCC 1.12662 PATRIC: 1247613.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.335	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.76	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	78.584	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	60.053	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudooceanicola antarcticus CGMCC 1.12662 NCBI: GCA_900215355
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	82.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	73.9
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.5

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19802, CGMCC 1.12662, LMG 27868

[Ref.: #113505]

SI-ID 390708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015	*
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014	*
Phylogeny	Pseudooceanicola endophyticus sp. nov., a novel endophytic bacterium isolated from bark Aegiceras corniculatum.	Zheng ZQ, Chen MS, Yan XR, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005036	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#113505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390708.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Pseudooceanicola antarcticus strain CGMCC 1.12662

Pseudooceanicola antarcticus CGMCC 1.12662

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