Pseudooceanicola antarcticus (LMG 27868, CGMCC 1.12662, JCM 19802)

Name: Pseudooceanicola antarcticus (LMG 27868, CGMCC 1.12662, JCM 19802)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162614

Type strain

Culture col. no. LMG 27868 CGMCC 1.12662 JCM 19802

NCBI tax ID(s) 1247613

Special Collections JCM

History Y.-Y. Huo Ar-45.

Links

Pseudooceanicola antarcticus JCM 19802 is a mesophilic prokaryote that was isolated from Seawater collected from the Antarctic Ocean.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 390708

LMG 27868,CGMCC 1.12662

@ref 20215

Last LPSN update 2026-02-09 11:39:26

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Pseudooceanicola

Species Pseudooceanicola antarcticus

Full scientific name Pseudooceanicola antarcticus (Huo et al. 2014) Lai et al. 2015

Synonyms (1)

Oceanicola antarcticus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98
125439	negative	98.6

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		90.76
125439		98.5

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation

67770

Sample typeSeawater collected from the Antarctic Ocean

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2721755848 annotated assembly for Pseudooceanicola antarcticus CGMCC 1.12662	contig	GCA_900215355	1247613.3	2721755848	1247613	75.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudooceanicola antarcticus strain Ar-45 16S ribosomal RNA gene, partial sequence	JX844452	1423		1247613

GC content

@ref	GC-content (mol%)	Method
67770	62	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudooceanicola antarcticus CGMCC 1.12662
NCBI: GCA_900215355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.70	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	motility	BacteriaNetⓘ	yes	73.90	no
125439	spore_formation	BacteriaNetⓘ	no	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudooceanicola antarcticus strain CGMCC 1.12662
PATRIC: 1247613.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	94.34	no
125438	spore-forming	spore-formingⓘ	no	90.76	no
125438	aerobic	aerobicⓘ	yes	78.58	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	60.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation of marine bacteria with potential for polyhydroxyalkanoate degradation and optimization for enzyme production.	Boondaeng A, Trakunjae C, Vaithanomsat P, Niyomvong N.	Sci Rep	10.1038/s41598-025-99034-4	2025
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014
Phylogeny	Pseudooceanicola endophyticus sp. nov., a novel endophytic bacterium isolated from bark Aegiceras corniculatum.	Zheng ZQ, Chen MS, Yan XR, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005036	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Pseudooceanicola antarcticus (LMG 27868, CGMCC 1.12662, JCM 19802)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900215355

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media