Name: Pseudooceanicola antarcticus JCM 19802
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162614

Type strain:

Species: Pseudooceanicola antarcticus

Culture col. no.: JCM 19802, CGMCC 1.12662, LMG 27868

Strain history: Y.-Y. Huo Ar-45.

NCBI tax ID(s): 1247613 (species)

SI-ID 390708

LMG 27868, CGMCC 1.12662

Section

Pseudooceanicola antarcticus JCM 19802 is a mesophilic bacterium that was isolated from Seawater collected from the Antarctic Ocean.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Pseudooceanicola*
	Species	**Pseudooceanicola antarcticus**
	Full Scientific Name (LPSN)	Pseudooceanicola antarcticus (Huo et al. 2014) Lai et al. 2015

Synonym

Oceanicola antarcticus

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater collected from the Antarctic Ocean
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Oceanicola antarcticus strain Ar-45 16S ribosomal RNA gene, partial sequence	JX844452	1423	ENA	1247613 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudooceanicola antarcticus CGMCC 1.12662	GCA_900215355	contig	GenBank	1247613 tax ID	*
[Ref.: #66792]	Pseudooceanicola antarcticus strain CGMCC 1.12662	1247613.3	wgs	PATRIC	1247613 tax ID	*
[Ref.: #66792]	Pseudooceanicola antarcticus CGMCC 1.12662	2721755848	draft	JGI IMG/M	1247613 tax ID	*

[Ref.: #67770]

GC-content

62 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudooceanicola antarcticus strain CGMCC 1.12662 PATRIC: 1247613.3
[Ref.: #69480]	motile	no	54.032	no
[Ref.: #69480]	gram-positive	no	98.572	no
[Ref.: #69480]	anaerobic	no	97.53	no
[Ref.: #69480]	aerobic	yes	80.848	no
[Ref.: #69480]	halophile	yes	68.945	no
[Ref.: #69480]	spore-forming	no	96.778	no
[Ref.: #69480]	thermophile	no	97.769	yes
[Ref.: #69480]	glucose-util	yes	86.21	no
[Ref.: #69480]	flagellated	no	81.905	no
[Ref.: #69480]	glucose-ferment	no	89.757	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19802, CGMCC 1.12662, LMG 27868

[Ref.: #113505]

SI-ID 390708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudooceanicola atlanticus gen. nov. sp. nov., isolated from surface seawater of the Atlantic Ocean and reclassification of Oceanicola batsensis, Oceanicola marinus, Oceanicola nitratireducens, Oceanicola nanhaiensis, Oceanicola antarcticus and Oceanicola flagellatus, as Pseudooceanicola batsensis comb. nov., Pseudooceanicola marinus comb. nov., Pseudooceanicola nitratireducens comb. nov., Pseudooceanicola nanhaiensis comb. nov., Pseudooceanicola antarcticus comb. nov., and Pseudooceanicola flagellatus comb. nov.	Lai Q, Li G, Liu X, Du Y, Sun F, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-015-0398-2	2015	*
Phylogeny	Oceanicola antarcticus sp. nov. and Oceanicola flagellatus sp. nov., moderately halophilic bacteria isolated from seawater.	Huo YY, Li ZY, You H, Wang CS, Post AF, Oren A, Xu XW	Int J Syst Evol Microbiol	10.1099/ijs.0.062588-0	2014	*
Phylogeny	Pseudooceanicola endophyticus sp. nov., a novel endophytic bacterium isolated from bark Aegiceras corniculatum.	Zheng ZQ, Chen MS, Yan XR, Tuo L	Int J Syst Evol Microbiol	10.1099/ijsem.0.005036	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390708.1 )

* These data were automatically processed and therefore are not curated

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Pseudooceanicola antarcticus strain CGMCC 1.12662

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