Name: Nibribacter sp. JCM 19445
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162502

Type strain:

Species: Nibribacter sp.

Culture col. no.: JCM 19445, KCTC 32453

Strain history: M. K. Kim DG15C.

NCBI tax ID(s): 1924939 (species)

Section

Nibribacter sp. JCM 19445 is a mesophilic bacterium of the family Hymenobacteraceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Nibribacter*
	Full Scientific Name (LPSN)	Nibribacter Kang et al. 2013

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KF303586 (>99% sequence identity) for Nibribacter from Microbeatlas

Aquatic Samples	20
Soil Samples	84
Animal Samples	13
Plant Samples	8
Total Samples	125

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rufibacter sp. DG15C 16S ribosomal RNA gene, partial sequence	KF303586	1455	ENA	1379909 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rufibacter sp. DG15C	GCA_001577755	complete	GenBank	1379909 tax ID
[Ref.: #66792]	Hymenobacter sp. DG25A	1385663.3	complete	PATRIC	1385663 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter sp. DG25A PATRIC: 1385663.3
[Ref.: #69480]	motile	no	92.491	no
[Ref.: #69480]	gram-positive	no	97.119	no
[Ref.: #69480]	anaerobic	no	99.571	no
[Ref.: #69480]	halophile	no	93.185	no
[Ref.: #69480]	spore-forming	no	94.326	no
[Ref.: #69480]	glucose-util	yes	77.528	no
[Ref.: #69480]	thermophile	no	94.599	yes
[Ref.: #69480]	aerobic	yes	88.616	no
[Ref.: #69480]	flagellated	no	96.901	no
[Ref.: #69480]	glucose-ferment	no	92.088	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19445, KCTC 32453

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Nibribacter sp. in external resources:
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Hymenobacter sp. DG25A

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