Name: Spirosoma radiotolerans JCM 19447
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162503

Type strain:

Species: Spirosoma radiotolerans

Culture col. no.: JCM 19447, KCTC 32455

Strain history: M. K. Kim DG5A.

NCBI tax ID(s): 1379870 (species)

Section

Spirosoma radiotolerans JCM 19447 is a mesophilic bacterium that was isolated from Soil,.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma radiotolerans**
	Full Scientific Name (LPSN)	Spirosoma radiotolerans Lee et al. 2017

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil,(37° 34' 30" N 127° 00' 30" E)
[Ref.: #67770]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
[Ref.: #67770]	Geographic location	37.5750°/127.0080°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF303585 (>99% sequence identity) for Spirosoma radiotolerans subclade from Microbeatlas

Aquatic Samples	315
Soil Samples	637
Animal Samples	567
Plant Samples	189
Total Samples	1708

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spirosoma radiotolerans strain DG5A 16S ribosomal RNA gene, partial sequence	KF303585	1449	ENA	1379870 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spirosoma radiotolerans DG5A	GCA_000974425	complete	GenBank	1379870 tax ID
[Ref.: #66792]	Spirosoma radiotolerans strain DG5A	1379870.5	complete	PATRIC	1379870 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spirosoma radiotolerans strain DG5A PATRIC: 1379870.5
[Ref.: #69480]	motile	no	92.67	no
[Ref.: #69480]	gram-positive	no	96.103	no
[Ref.: #69480]	anaerobic	no	99.497	no
[Ref.: #69480]	halophile	no	94.861	no
[Ref.: #69480]	spore-forming	no	91.865	no
[Ref.: #69480]	thermophile	no	99.184	no
[Ref.: #69480]	glucose-util	yes	79.857	no
[Ref.: #69480]	aerobic	yes	90.704	no
[Ref.: #69480]	flagellated	no	97.782	no
[Ref.: #69480]	glucose-ferment	no	86.778	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19447, KCTC 32455

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma radiotolerans sp. nov., a gamma-radiation-resistant bacterium isolated from gamma ray-irradiated soil.	Lee JJ, Srinivasan S, Lim S, Joe M, Im S, Bae SI, Park KR, Han JH, Park SH, Joo BM, Park SJ, Kim MK	Curr Microbiol	10.1007/s00284-014-0584-x	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Spirosoma radiotolerans strain DG5A

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