Name: Halolamina rubra JCM 19436
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162497

Type strain:

Species: Halolamina rubra

Culture col. no.: JCM 19436, CECT 8421

Strain history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1107.

NCBI tax ID(s): 1380430 (species)

SI-ID 394339

CECT 8421, JCM 19436

Other strains from Halolamina rubra

H. rubra JCM 19437, CECT 8420

Section

Halolamina rubra JCM 19436 is a mesophilic archaeon that was isolated from Solar salt.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halolamina*
	Species	**Halolamina rubra**
	Full Scientific Name (LPSN)	Halolamina rubra Cha et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Solar salt
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KF314044 (>99% sequence identity) for Halolamina rubra from Microbeatlas

Aquatic Samples
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina rubra strain CBA1107 16S ribosomal RNA gene, partial sequence	KF314044	1473	ENA	1380430 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halolamina rubra CBA1107	GCA_000739555	contig	GenBank	1380430 tax ID

[Ref.: #67770]

GC-content

65.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halolamina rubra CBA1107 NCBI: GCA_000739555.1
[Ref.: #69480]	motile	no	80.47	no
[Ref.: #69480]	flagellated	no	97.732	no
[Ref.: #69480]	gram-positive	no	96.652	no
[Ref.: #69480]	anaerobic	no	95.883	no
[Ref.: #69480]	aerobic	yes	82.628	no
[Ref.: #69480]	halophile	yes	89.079	no
[Ref.: #69480]	spore-forming	no	95.073	no
[Ref.: #69480]	thermophile	no	73.521	yes
[Ref.: #69480]	glucose-util	yes	83.735	no
[Ref.: #69480]	glucose-ferment	no	86.745	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19436, CECT 8421

[Ref.: #113499]

SI-ID 394339

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Halolamina rubra CBA1107(T), an agarolytic haloarchaeon isolated from solar salt.	Lee MH, Lee HW, Song EJ, Song HS, Yim KJ, Cha IT, Seo MJ, Rhee JK, Choi HJ, Kim D, Kim KN, Roh SW, Nam YD	Mar Genomics	10.1016/j.margen.2014.09.003	2014	*
Phylogeny	Halolamina rubra sp. nov., a haloarchaeon isolated from non-purified solar salt.	Cha IT, Yim KJ, Song HS, Lee HW, Hyun DW, Kim KN, Choi JS, Kim D, Lee SJ, Seo MJ, Choi HJ, Bae JW, Rhee SK, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0145-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113499

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394339.1 )

* These data were automatically processed and therefore are not curated

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Halolamina rubra CBA1107

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