Name: Pseudidiomarina planktonica JCM 19263
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162448

Type strain:

Species: Pseudidiomarina planktonica

Culture col. no.: JCM 19263, CGMCC 1.12458

Strain history: Z.-P. Liu TS-T11.

NCBI tax ID(s): 1323738 (species)

Section

Pseudidiomarina planktonica JCM 19263 is a mesophilic, Gram-negative bacterium that was isolated from Water of Tuosu lake in the Qaidam basin.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Idiomarinaceae*
	Genus	*Pseudidiomarina*
	Species	**Pseudidiomarina planktonica**
	Full Scientific Name (LPSN)	Pseudidiomarina planktonica (Zhong et al. 2014) Liu et al. 2019

Synonym

Idiomarina planktonica

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #69480]	Motility	yes Confidence in %96.349

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Water of Tuosu lake in the Qaidam basin
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC762312 (>99% sequence identity) for Pseudidiomarina planktonica subclade from Microbeatlas

Aquatic Samples	80
Soil Samples	36
Animal Samples	18
Plant Samples	1
Total Samples	135

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Idiomarina planktonica strain TS-T11 16S ribosomal RNA gene, partial sequence	KC762312	1505	ENA	1323738 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Pseudidiomarina planktonica TS-T11	GCA_003987425	contig	GenBank	1323738 tax ID
[Ref.: #66792]	Pseudidiomarina planktonica CGMCC 1.12458	GCA_900177775	scaffold	GenBank	1323738 tax ID	*
[Ref.: #66792]	Idiomarina planktonica strain CGMCC 1.12458	1323738.3	wgs	PATRIC	1323738 tax ID	*
[Ref.: #66792]	Pseudidiomarina planktonica CGMCC 1.12458	2718218509	draft	JGI IMG/M	1323738 tax ID	*

[Ref.: #67770]

GC-content

48.97 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudidiomarina planktonica CGMCC 1.12458 NCBI: GCA_900177775.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudidiomarina planktonica CGMCC 1.12458 NCBI: GCA_900177775.1
[Ref.: #69480]	motile	yes	90.822	no
[Ref.: #69480]	flagellated	no	54.833	no
[Ref.: #69480]	gram-positive	no	99.068	no
[Ref.: #69480]	anaerobic	no	97.781	no
[Ref.: #69480]	aerobic	yes	90.719	no
[Ref.: #69480]	halophile	yes	63.732	no
[Ref.: #69480]	spore-forming	no	97.197	no
[Ref.: #69480]	thermophile	no	99.329	yes
[Ref.: #69480]	glucose-util	yes	76.979	no
[Ref.: #69480]	glucose-ferment	no	82.018	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19263, CGMCC 1.12458

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina planktonica sp. nov., isolated from a saline lake.	Zhong ZP, Liu Y, Liu HC, Wang F, Song L, Liu ZP	Int J Syst Evol Microbiol	10.1099/ijs.0.065938-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Pseudidiomarina planktonica CGMCC 1.12458

Pseudidiomarina planktonica CGMCC 1.12458

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