Name: Vibrio variabilis JCM 19239
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162443

Type strain:

Species: Vibrio variabilis

Culture col. no.: JCM 19239

Strain history: T. Sawabe C206.

NCBI tax ID(s): 990271 (species)

Other strains from Vibrio variabilis

V. variabilis R-40492, DSM 26147, CAIM 1454, ... (type strain)

Vibrio variabilis JCM 19239 is a mesophilic bacterium of the family Vibrionaceae.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	"Vibrionales"
	Family	*Vibrionaceae*
	Genus	*Vibrio*
	Species	**Vibrio variabilis**
	Full Scientific Name (LPSN)	Vibrio variabilis Chimetto et al. 2011

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Vibrio variabilis JCM 19239	GCA_000755405	contig	GenBank	990271 tax ID
[Ref.: #66792]	Vibrio variabilis strain JCM 19239	990271.3	wgs	PATRIC	990271 tax ID	*
[Ref.: #66792]	Vibrio variabilis JCM 19239	2609460229	draft	JGI IMG/M	990271 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vibrio variabilis strain JCM 19239 PATRIC: 990271.3
[Ref.: #69480]	motile	yes	90.813	no
[Ref.: #69480]	flagellated	yes	85.89	no
[Ref.: #69480]	gram-positive	no	98.551	no
[Ref.: #69480]	anaerobic	no	96.179	no
[Ref.: #69480]	halophile	yes	54.064	no
[Ref.: #69480]	spore-forming	no	94.871	no
[Ref.: #69480]	thermophile	no	99.493	yes
[Ref.: #69480]	glucose-util	yes	92.617	no
[Ref.: #69480]	aerobic	yes	83.909	no
[Ref.: #69480]	glucose-ferment	yes	89.421	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19239

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	3,6-Anhydro-L-Galactose Dehydrogenase VvAHGD is a Member of a New Aldehyde Dehydrogenase Family and Catalyzes by a Novel Mechanism with Conformational Switch of Two Catalytic Residues Cysteine 282 and Glutamate 248.	Wang Y, Li PY, Zhang Y, Cao HY, Wang YJ, Li CY, Wang P, Su HN, Chen Y, Chen XL, Zhang YZ	J Mol Biol	10.1016/j.jmb.2020.02.008	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Vibrio variabilis strain JCM 19239

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