Cite this strain

Vibrio ponticus (JCM 19238)

Name: Vibrio ponticus (JCM 19238)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162442

Type strain

Culture col. no. JCM 19238

NCBI tax ID(s) 265668

Special Collections JCM

History T. Sawabe C121.

Links

Vibrio ponticus JCM 19238 is a bacterium of the family Vibrionaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 393512

JCM 19238

@ref 20215

Last LPSN update 2026-02-09 11:39:24

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio ponticus

Full scientific name Vibrio ponticus Macián et al. 2005

BacDive ID	Other strains from **Vibrio ponticus** (2)	Type strain
17295	V. ponticus 369, DSM 16217, CECT 5869, CCUG 50742, CIP ... (type strain)
17296	V. ponticus DSM 16218, CECT 5870, DCR DCr35, DCR 35

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	99.4

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.4

Spore formation

@ref	Spore formation	Confidence
125438		92.089
125439		99.6

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM75415v1 assembly for Vibrio ponticus JCM 19238	contig	GCA_000754155	265668.3	2597490163	265668	10.71

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio ponticus JCM 19238
NCBI: GCA_000754155

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	yes	78.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio ponticus strain JCM 19238
PATRIC: 265668.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.16	no
125438	spore-forming	spore-formingⓘ	no	92.09	no
125438	aerobic	aerobicⓘ	no	64.82	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	86.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Experimental infection of the white snook Centropomus viridis Lockington (1877) with Vibrio ponticus: Histopathological manifestations and screening for putative virulence genes	Lozano-Olvera R, Abad-Rosales SM, Gomez-Gil B, Soto-Rodriguez SA, Ibarra-Castro L.	Aquaculture	10.1016/j.aquaculture.2020.735599	2020
	Identification of Vibrio ponticus as a bacterial pathogen of coral trout Plectropomus leopardus.	Gai C, Liu J, Zheng X, Xu, Ye H.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1089247	2022
Phylogeny	Water depth outweighs reef condition in shaping non-geniculate coralline algae-associated microbial communities in coral reefs: A case study from Thailand.	Pattarach K, Surachat K, Liu SL, Mayakun J.	Heliyon	10.1016/j.heliyon.2024.e25486	2024
	Beneficial effects of a host gut-derived probiotic, Bacillus pumilus, on the growth, non-specific immune response and disease resistance of juvenile golden pompano, Trachinotus ovatus	Liu S, Wang S, Cai Y, Li E, Ren Z, Wu Y, Guo W, Sun Y, Zhou Y.	Aquaculture	10.1016/j.aquaculture.2019.734446	2020
	Isolation, identification and pathogenicity characterization of Vibrio ponticus from the golden pompano Trachinotus ovatus	Liu S, Li E, Cai Y, Wang S, Ren Z, Li Q, Guo W, Wu Y, Zhou Y.	Aquaculture	10.1016/j.aquaculture.2018.04.065	2018
	Lymphocystis viral disease impacts the diversity and functional profiles of the skin microbiome in gilthead seabream.	Xavier R, Perez-Losada M, Silva SM, Lino M, Faleiro MJ, Canada P.	Front Microbiol	10.3389/fmicb.2024.1470572	2024
	Risk of Secondary Bacterial Infections Revealed by Changes in Trachinotus ovatus Skin and Gill Microbiota During a Cryptocaryon irritans Infection Cycle.	Liang N, Zhu L, Wang S, Zhang W, Lin X, Zhou Y, Ke H, Yuan S, Li M, Cai Y.	Microorganisms	10.3390/microorganisms13071660	2025
	Susceptibility of Pacific white snook Centropomus viridis to Vibrio species.	Soto-Rodriguez SA, Lozano-Olvera R, Abad-Rosales SM, Martinez-Brown JM, Ibarra-Castro L.	Dis Aquat Organ	10.3354/dao03370	2019
Phylogeny	Metagenomic Characterization of Microbiome Taxa Associated with Coral Reef Communities in North Area of Tabuk Region, Saudia Arabia.	Ghobashy MOI, Al-Otaibi AS, Alharbi BM, Alshehri D, Ghabban H, Albalawi DA, Alenzi AM, Alatawy M, Alatawi FA, Algammal AM, Mir R, Mahrous YM.	Life (Basel)	10.3390/life15030423	2025
Genetics	Metagenomic and Metabolomic Analyses Reveal the Role of Gut Microbiome-Associated Metabolites in the Muscle Elasticity of the Large Yellow Croaker (Larimichthys crocea).	Cheng Z, Huang H, Qiao G, Wang Y, Wang X, Yue Y, Gao Q, Peng S.	Animals (Basel)	10.3390/ani14182690	2024
	Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota.	Al-Saari N, Meirelles PM, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Thompson FL, Gomez-Gil B, Sawabe T, Sawabe T.	Genome Announc	10.1128/genomea.01095-14	2014
	Intestinal Microbiome Richness of Coral Reef Damselfishes (Actinopterygii: Pomacentridae).	Kavazos CRJ, Ricci F, Leggat W, Casey JM, Choat JH, Ainsworth TD.	Integr Org Biol	10.1093/iob/obac026	2022
Phylogeny	Multilocus Sequence Analysis of the redefined clade Scophthalmi in the genus Vibrio.	Tarazona E, Perez-Cataluna A, Lucena T, Arahal DR, Macian MC, Pujalte MJ.	Syst Appl Microbiol	10.1016/j.syapm.2015.03.005	2015
	Sedimentary Vibrio Blooms in the Xisha Islands May Associate with the 2020 Coral Bleaching Event.	Zhao W, Chen L, Liu M, Huang K, Ding Y, Xiao J, Tian P, Liu J, Zhang XH, Niu W, Wang X.	Appl Environ Microbiol	10.1128/aem.00543-23	2023
Phylogeny	Integrating short- and full-length 16S rRNA gene sequencing to elucidate microbiome profiles in Pacific white shrimp (Litopenaeus vannamei) ponds.	Rajonhson DM, Angthong P, Thepsuwan T, Sutheeworapong S, Satanwat P, Tapaneeyaworawong P, Powtongsook S, Kruasuwan W, Jenjaroenpun P, Wongsurawat T, Chaiyapechara S, Rungrassamee W.	Microbiol Spectr	10.1128/spectrum.00965-24	2024
Enzymology	Duplex On-Site Detection of Vibrio cholerae and Vibrio vulnificus by Recombinase Polymerase Amplification and Three-Segment Lateral Flow Strips.	Wang P, Liao L, Ma C, Zhang X, Yu J, Yi L, Liu X, Shen H, Gao S, Lu Q.	Biosensors (Basel)	10.3390/bios11050151	2021
	A Real-Time Recombinase Polymerase Amplification Method for Rapid Detection of Vibrio vulnificus in Seafood.	Yang X, Zhang X, Wang Y, Shen H, Jiang G, Dong J, Zhao P, Gao S.	Front Microbiol	10.3389/fmicb.2020.586981	2020
Phylogeny	Disentangling the abundance and structure of Vibrio communities in a semi-enclosed Bay with mariculture (Dongshan Bay, Southern China).	Xu W, Lin W, Wang Z, Gao Y, Luo Y, Grossart HP, Guo Y, Gao Q, Huang L, Luo Z.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.07.040	2021
	Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate.	Nonaka L, Yamamoto T, Maruyama F, Hirose Y, Onishi Y, Kobayashi T, Suzuki S, Nomura N, Masuda M, Yano H.	PLoS One	10.1371/journal.pone.0198613	2018
	Influence of Gallic Acid-Containing Mouth Spray on Dental Health and Oral Microbiota of Healthy Cats-A Pilot Study.	Chaiyasut C, Sivamaruthi BS, Bharathi M, Tansrisook C, Peerajan S, Chaiyasut K, Khongtan S, Tanongpitchayes K, Thongma N, Chawnan N, Thongkorn K.	Vet Sci	10.3390/vetsci9070313	2022
	Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces.	Smriga S, Sandin SA, Azam F.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.00879.x	2010
Phylogeny	Identification and pathogenicity of Vibrio ponticus affecting cultured Japanese sea bass, Lateolabrax japonicus (Cuvier in Cuvier and Valenciennes).	Xie ZY, Hu CQ, Zhang LP, Chen C, Ren CH, Shen Q.	Lett Appl Microbiol	10.1111/j.1472-765x.2007.02141.x	2007
	Spatiotemporal Dynamics of Vibrio Communities and Abundance in Dongshan Bay, South of China.	Xu W, Gong L, Yang S, Gao Y, Ma X, Xu L, Chen H, Luo Z.	Front Microbiol	10.3389/fmicb.2020.575287	2020
	Microbial diversity composition of apple tree roots and resistance of apple Valsa canker with different grafting rootstock types.	Wang J, Wang R, Kang F, Yan X, Sun L, Wang N, Gong Y, Gao X, Huang L.	BMC Microbiol	10.1186/s12866-022-02517-x	2022
Biotechnology	Vibrios of the spotted rose snapper Lutjanus guttatus Steindachner, 1869 from northwestern Mexico.	Gomez-Gil B, Fajer-Avila E, Garcia-Vargas F.	J Appl Microbiol	10.1111/j.1365-2672.2006.03199.x	2007
	Metagenomic analysis of microbial community associated with coral mucus from the Gulf of Aqaba.	Hussien E, Juhmani AS, AlMasri R, Al-Horani F, Al-Saghir M.	Heliyon	10.1016/j.heliyon.2019.e02876	2019
	Atypical integrative element with strand-biased circularization activity assists interspecies antimicrobial resistance gene transfer from Vibrio alfacsensis.	Nonaka L, Masuda M, Yano H.	PLoS One	10.1371/journal.pone.0271627	2022
	Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism.	Abe K, Nomura N, Suzuki S.	FEMS Microbiol Ecol	10.1093/femsec/fiaa031	2020
Phylogeny	Vibrio panuliri sp. nov., a marine bacterium isolated from spiny lobster, Panulirus penicillatus and transfer of Vibrio ponticus from Scophthalmi clade to the newly proposed Ponticus clade.	Kumari P, Poddar A, Schumann P, Das SK.	Res Microbiol	10.1016/j.resmic.2014.10.012	2014
Phylogeny	Vibrio alfacsensis sp. nov., isolated from marine organisms.	Gomez-Gil B, Roque A, Chimetto L, Moreira APB, Lang E, Thompson FL.	Int J Syst Evol Microbiol	10.1099/ijs.0.033191-0	2012
Phylogeny	Vibrio ponticus sp. nov., a neighbour of V fluvialis-V. furnissii clade, isolated from gilthead sea bream, mussels and seawater.	Macian MC, Garay E, Grimont PA, Pujalte MJ.	Syst Appl Microbiol	10.1078/0723202041748127	2004

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio ponticus (JCM 19238)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000754155

Genome-based predictions

Predictions

Literature

Literature

References

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