Name: Deinococcus soli JCM 19176
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162421

Type strain:

Species: Deinococcus soli

Culture col. no.: JCM 19176, KCTC 33153

Strain history: M. K. Kim; Seoul Women's Univ., South Korea; N5.

NCBI tax ID(s): 1309411 (species)

Section

Deinococcus soli JCM 19176 is a mesophilic bacterium that was isolated from Soil sample collected from a rice field in Jeongeup-si.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus soli**
	Full Scientific Name (LPSN)	Deinococcus soli Cha et al. 2016

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil sample collected from a rice field in Jeongeup-si
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC771032 (>99% sequence identity) for Deinococcus from Microbeatlas

Aquatic Samples	1779
Soil Samples	295
Animal Samples	1502
Plant Samples	371
Total Samples	3947

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	'Deinococcus soli' Cha et al. 2014 strain N5 16S ribosomal RNA gene, partial sequence	KC771032	1448	ENA	1309411 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Deinococcus soli N5	GCA_001007995	complete	GenBank	1309411 tax ID

[Ref.: #67770]

GC-content

71.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19176, KCTC 33153

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus soli sp. nov., a gamma-radiation-resistant bacterium isolated from rice field soil.	Cha S, Srinivasan S, Seo T, Kim MK	Curr Microbiol	10.1007/s00284-014-0542-7	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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