Name: Bacteroides cellulosilyticus CRE21
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1623

Type strain:

Species: Bacteroides cellulosilyticus

Strain Designation: CRE21

Culture col. no.: DSM 14838, CCUG 44979, JCM 15632

Strain history: CCUG 44979 <-- M. D. Collins <-- A. Bernalier-Donadille CRE21.

NCBI tax ID(s): 537012 (strain), 246787 (species)

SI-ID 402776

DSM 14838, CCUG 44979

Special Collections

Other strains from Bacteroides cellulosilyticus

Section

Bacteroides cellulosilyticus CRE21 is an anaerobe, Gram-negative, rod-shaped bacterium that was isolated from human faeces.

Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides cellulosilyticus**
	Full Scientific Name (LPSN)	Bacteroides cellulosilyticus Robert et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32120]	Gram stain	negative
[Ref.: #28365]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %91.889

[Ref.: #32120]	Cell length	1.7 µm
[Ref.: #28365]	Cell length	1.7 µm

[Ref.: #32120]	Cell width	0.9 µm
[Ref.: #28365]	Cell width	0.9 µm

[Ref.: #32120]	Cell shape	rod-shaped
[Ref.: #28365]	Cell shape	rod-shaped

[Ref.: #32120]	Motility	no
[Ref.: #28365]	Motility	no

[Ref.: #5571]	Type of hemolysis	beta
[Ref.: #5571]	Hemolysis ability	1
[Ref.: #5571]	Incubation period	1-2 days

[Ref.: #28365]	Colony size	2-5 mm
[Ref.: #28365]	Colony color	white to slightly brown
[Ref.: #28365]	Colony shape	circular
[Ref.: #28365]	Cultivation medium used	glucose-BC agar

[Ref.: #32120]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5571]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #5571]

Culture medium growth

[Ref.: #5571]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5571]

Culture medium composition

expand / minimize

[Ref.: #5571]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #5571]

Culture medium growth

[Ref.: #5571]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5571]

Culture medium composition

expand / minimize

[Ref.: #28365]

Culture medium

glucose-BC agar

[Ref.: #28365]

Culture medium growth

		Temperature
[Ref.: #5571]	growth	37 °C
[Ref.: #28365]	optimum	37 °C
[Ref.: #28365]	growth	30-39 °C
[Ref.: #32120]	growth	30-39 °C
[Ref.: #32120]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

		pH
[Ref.: #32120]	optimum	6.8
[Ref.: #28365]	optimum	6.8
[Ref.: #32120]	growth	6.5-7.2
[Ref.: #28365]	growth	6.5-7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5571]	Oxygen tolerance	anaerobe
[Ref.: #32120]	Oxygen tolerance	anaerobe
[Ref.: #28365]	Oxygen tolerance	obligate anaerobe

[Ref.: #32120]	Ability of spore formation	no
[Ref.: #28365]	Ability of spore formation	no

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32120]	arabinose ChEBI	+	carbon source
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #32120]	cellobiose ChEBI	+	carbon source
[Ref.: #28365]	cellobiose ChEBI	+/-	growth
[Ref.: #68367]	cellobiose ChEBI	+	builds acid from	* from API 20A
[Ref.: #28365]	cellulose ChEBI	+	degradation
[Ref.: #28365]	cellulose ChEBI	+	fermentation
[Ref.: #68367]	D-glucose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	+	builds acid from	* from API 20A
[Ref.: #32120]	esculin ChEBI	+	hydrolysis
[Ref.: #28365]	esculin ChEBI	+/-	growth
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #32120]	fructose ChEBI	+	carbon source
[Ref.: #28365]	fructose ChEBI	+	fermentation
[Ref.: #28365]	fucose ChEBI	-	growth
[Ref.: #32120]	galactose ChEBI	+	carbon source
[Ref.: #28365]	galactose ChEBI	+	fermentation
[Ref.: #32120]	galacturonate ChEBI	+	carbon source
[Ref.: #28365]	galacturonate ChEBI	+	fermentation
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #32120]	glucose ChEBI	+	carbon source
[Ref.: #28365]	glucose ChEBI	+	fermentation
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	+	builds acid from	* from API 20A
[Ref.: #32120]	lactose ChEBI	+	carbon source
[Ref.: #28365]	lactose ChEBI	+/-	growth
[Ref.: #68367]	lactose ChEBI	+	builds acid from	* from API 20A
[Ref.: #28365]	lactulose ChEBI	+	fermentation
[Ref.: #32120]	maltose ChEBI	+	carbon source
[Ref.: #28365]	maltose ChEBI	+	fermentation
[Ref.: #68367]	maltose ChEBI	+	builds acid from	* from API 20A
[Ref.: #28365]	mannitol ChEBI	-	growth
[Ref.: #32120]	mannose ChEBI	+	carbon source
[Ref.: #28365]	mannose ChEBI	+	fermentation
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #32120]	melibiose ChEBI	+	carbon source
[Ref.: #28365]	melibiose ChEBI	+	fermentation
[Ref.: #28365]	myo-inositol ChEBI	-	growth
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #28365]	pectin ChEBI	+	fermentation
[Ref.: #32120]	raffinose ChEBI	+	carbon source
[Ref.: #28365]	raffinose ChEBI	+/-	growth
[Ref.: #68367]	raffinose ChEBI	+	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	+	fermentation	* from API rID32A
[Ref.: #32120]	ribose ChEBI	+	carbon source
[Ref.: #28365]	ribose ChEBI	+	fermentation
[Ref.: #32120]	salicin ChEBI	+	carbon source
[Ref.: #28365]	salicin ChEBI	+/-	growth
[Ref.: #28365]	sorbitol ChEBI	-	growth
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #28365]	starch ChEBI	+	fermentation
[Ref.: #32120]	sucrose ChEBI	+	carbon source
[Ref.: #28365]	sucrose ChEBI	+	fermentation
[Ref.: #68367]	sucrose ChEBI	+	builds acid from	* from API 20A
[Ref.: #28365]	trehalose ChEBI	-	growth
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	+	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
[Ref.: #28365]	xylan ChEBI	+/-	growth
[Ref.: #32120]	xylose ChEBI	+	carbon source
[Ref.: #28365]	xylose ChEBI	+	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #28365]	acetate ChEBI	yes
[Ref.: #28365]	propionate ChEBI	yes
[Ref.: #28365]	succinate ChEBI	yes
[Ref.: #68367]	indole ChEBI	yes	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #32120]	acid phosphatase	+	3.1.3.2
[Ref.: #28365]	acid phosphatase	+	3.1.3.2
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #32120]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28365]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28365]	alpha-arabinosidase	+	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #28365]	alpha-fucosidase	+/-	3.2.1.51
[Ref.: #68380]	alpha-fucosidase	+	3.2.1.51	* from API rID32A
[Ref.: #28365]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #28365]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #28365]	beta-galactosidase	+	3.2.1.23
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #28365]	beta-glucosidase	+	3.2.1.21
[Ref.: #68380]	beta-glucosidase	+	3.2.1.21	* from API rID32A, API 20A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #28365]	catalase	-	1.11.1.6
[Ref.: #28365]	cytochrome oxidase	-	1.9.3.1
[Ref.: #28365]	esterase Lipase (C 8)	+
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #28365]	glutamate decarboxylase	+	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #28365]	glutamyl-glutamate arylamidase	+
[Ref.: #68380]	glutamyl-glutamate arylamidase	+		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #28365]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #28365]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #28365]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #28365]	phenylalanine arylamidase	+
[Ref.: #28365]	phenylalanine arylamidase	+/-
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #28365]	tyrosine arylamidase	+/-
[Ref.: #68380]	tyrosine arylamidase	+		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #5571]	2015	+	-	+	-	+	+	+	+/-	+	+	-	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #5571]	12906	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	-	-	+	+	-	-	+	+	-	-	+	-
[Ref.: #5571]	12173	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	+	+	-	-	+	-	-	-	+	+	-	-	+	-
[Ref.: #5571]	12172	-	-	+	+	-	+	+	+	-	-	+	+	+	+	-	+	-	-	-	+	+	-	-	+	+	-	-	+	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	vitamin B6 metabolism	81.82	9 of 11
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	vitamin B12 metabolism	70.59	24 of 34
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	histidine metabolism	68.97	20 of 29
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	leucine metabolism	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	methionine metabolism	53.85	14 of 26
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	adipate degradation	50	1 of 2
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	sphingosine metabolism	50	3 of 6
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	cysteine metabolism	44.44	8 of 18
[Ref.: #66794]	oxidative phosphorylation	41.76	38 of 91
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	urea cycle	38.46	5 of 13
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	glutathione metabolism	28.57	4 of 14
[Ref.: #66794]	heme metabolism	28.57	4 of 14
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	molybdenum cofactor biosynthesis	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5571]	Sample type/isolated from	human faeces
[Ref.: #5571]	Country	France
[Ref.: #5571]	Country ISO 3 Code	FRA
[Ref.: #5571]	Continent	Europe

[Ref.: #28365]	Sample type/isolated from	faeces of a healthy, non-methane-excreting individual

[Ref.: #56574]	Sample type/isolated from	Human feces,50-yr-old male,healthy volunteer
[Ref.: #56574]	Geographic location (country and/or sea, region)	Clermont Ferrand/Theix,INRA
[Ref.: #56574]	Country	France
[Ref.: #56574]	Country ISO 3 Code	FRA
[Ref.: #56574]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ583243 (>99% sequence identity) for Bacteroides cellulosilyticus subclade from Microbeatlas

Aquatic Samples	665
Soil Samples	111
Animal Samples	48605
Plant Samples	47
Total Samples	49428

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5571]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides cellulosilyticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 15632	AB510698	1473	GenBank ENA	246787 tax ID
[Ref.: #5571]	Bacteroides cellulosilyticus DSM 14838 partial 16S rRNA gene, type strain CRE21T	AJ583243	1426	GenBank ENA	537012 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bacteroides cellulosilyticus DSM 14838	GCA_000158035	scaffold	GenBank ENA	537012 tax ID
[Ref.: #66792]	Bacteroides cellulosilyticus DSM 14838	537012.5	wgs	PATRIC	537012 tax ID	*
[Ref.: #66792]	Bacteroides cellulosilyticus DSM 14838	643886111	draft	JGI IMG/M	537012 tax ID	*
[Ref.: #66792]	Bacteroides cellulosilyticus DSM 14838	GCA_028539415	contig	GenBank ENA	537012 tax ID	*

[Ref.: #5571]	GC-content	41.1 mol%
[Ref.: #5571]	GC-content	42.7 mol%	sequence analysis
[Ref.: #67770]	GC-content	41.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides cellulosilyticus DSM 14838 PATRIC: 537012.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	91.889	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.803	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.424	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	91.099	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.518	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	yes

Availability in culture collections External links

[Ref.: #5571]

Culture collection no.

DSM 14838, CCUG 44979, JCM 15632

[Ref.: #71269]

SI-ID 402776

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Diverse Intestinal Bacteria Contain Putative Zwitterionic Capsular Polysaccharides with Anti-inflammatory Properties.	Neff CP, Rhodes ME, Arnolds KL, Collins CB, Donnelly J, Nusbacher N, Jedlicka P, Schneider JM, McCarter MD, Shaffer M, Mazmanian SK, Palmer BE, Lozupone CA	Cell Host Microbe	10.1016/j.chom.2016.09.002	2016	*
Phylogeny	Bacteroides cellulosilyticus sp. nov., a cellulolytic bacterium from the human gut microbial community.	Robert C, Chassard C, Lawson PA, Bernalier-Donadille A	Int J Syst Evol Microbiol	10.1099/ijs.0.64998-0	2007	*

References

#5571

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14838

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28365

IJSEM 1516 2007 ( DOI 10.1099/ijs.0.64998-0 , PubMed 17625186 )

#32120

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28365 (see below)

#56574 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44979

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71269

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402776.1 )

#28365

IJSEM 1516 2007 ( DOI 10.1099/ijs.0.64998-0 , PubMed 17625186 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bacteroides cellulosilyticus in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Bacteroides cellulosilyticus DSM 14838

Change proposal

Change proposal