Name: Bradyrhizobium sp. JCM 18382
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162241

Type strain:

Species: Bradyrhizobium sp.

Culture col. no.: JCM 18382

Strain history: K. Satsuma 17-4.

NCBI tax ID(s): 1215384 (species)

Other strains from Bradyrhizobium sp.

B. sp. DSM 1984, TAL 309
B. sp. 61A118, DSM 5966, ATCC 35280, TAL ...
B. sp. 309, DSM 5968, ATCC 35642, TAL ...
B. sp. IHP 195, DSM 5969, ATCC 35644, ...
B. sp. 28v, TUX28v, DSM 18452, HAMBI 2912
B. sp. 98m, TUX98m, DSM 18453, HAMBI 2913
B. sp. Leaf396, DSM 102579
B. sp. Leaf401, DSM 102580
B. sp. SR83, DSM 21560
B. sp. AP10, DSM 21562
B. sp. CCUG 42968
B. sp. CCUG 45072
B. sp. CCUG 49693
B. sp. CCUG 49958
B. sp. CCUG 50520
B. sp. CCUG 52223
B. sp. CCUG 53028
B. sp. CCUG 57689
B. sp. CCUG 57803
B. sp. CCUG 57804
B. sp. CCUG 57805
B. sp. CCUG 57807
B. sp. CCUG 57808
B. sp. CCUG 57809
B. sp. CCUG 57810
B. sp. CCUG 57811
B. sp. CCUG 57812
B. sp. CCUG 57813
B. sp. CCUG 57868
B. sp. CCUG 57907
B. sp. CCUG 57908
B. sp. CCUG 57909
B. sp. CCUG 57964, LMG 12187
B. sp. CCUG 57965, LMG 11795
B. sp. CCUG 59660
B. sp. CCUG 59956
B. sp. CCUG 61868
B. sp. CCUG 62248
B. sp. JCM 18004
B. sp. JCM 20936, ATCC 10325, IAM 13589, ...
B. sp. I71, DSM 112639

Section

Bradyrhizobium sp. JCM 18382 is a mesophilic, Gram-negative bacterium that was isolated from Riverbed sediment of Tonegawa River.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Nitrobacteraceae*
	Genus	*Bradyrhizobium*
	Full Scientific Name (LPSN)	Bradyrhizobium Jordan 1982

Synonym

Agromonas

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.982

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Riverbed sediment of Tonegawa River
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ibaraki Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB672634 (>99% sequence identity) for Bradyrhizobium from Microbeatlas

Aquatic Samples	4833
Soil Samples	14338
Animal Samples	6732
Plant Samples	3278
Total Samples	29181

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bradyrhizobium sp. 17-4 gene for 16S ribosomal RNA, partial sequence	AB672634	1376	ENA	1215384 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bradyrhizobium sp. 17-4 JCM 18382	GCA_001312945	contig	GenBank	1215384 tax ID	*
[Ref.: #66792]	Bradyrhizobium sp. 17-4 strain JCM 18382	1215384.3	wgs	PATRIC	1215384 tax ID	*
[Ref.: #66792]	Bradyrhizobium sp. JCM 18382	2734481923	draft	JGI IMG/M	1215384 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bradyrhizobium sp. 17-4 strain JCM 18382 PATRIC: 1215384.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bradyrhizobium sp. 17-4 strain JCM 18382 PATRIC: 1215384.3
[Ref.: #69480]	motile	yes	87.534	no
[Ref.: #69480]	gram-positive	no	97.37	no
[Ref.: #69480]	anaerobic	no	96.466	no
[Ref.: #69480]	aerobic	yes	90.25	no
[Ref.: #69480]	halophile	no	97.011	no
[Ref.: #69480]	spore-forming	no	93.465	no
[Ref.: #69480]	thermophile	no	98.802	yes
[Ref.: #69480]	glucose-util	yes	83.644	no
[Ref.: #69480]	flagellated	no	65.044	no
[Ref.: #69480]	glucose-ferment	no	91.722	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18382

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bradyrhizobium sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Bradyrhizobium sp. 17-4 strain JCM 18382

Bradyrhizobium sp. 17-4 strain JCM 18382

Change proposal

Change proposal