Name: Carboxylicivirga mesophila JCM 18290
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162223

Type strain:

Species: Carboxylicivirga mesophila

Culture col. no.: JCM 18290, KCCM 42978

Strain history: K. K. Kwon MEBiC07026.

NCBI tax ID(s): 1166478 (species)

Special Collections

Section

Carboxylicivirga mesophila JCM 18290 is a Gram-negative bacterium that was isolated from Tidal flat sediment at Daebudo-Island in the Yellow Sea.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Marinilabiliaceae*
	Genus	*Carboxylicivirga*
	Species	**Carboxylicivirga mesophila**
	Full Scientific Name (LPSN)	Carboxylicivirga mesophila Yang et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %91.499

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	32 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment at Daebudo-Island in the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ672625 (>99% sequence identity) for Carboxylicivirga mesophila subclade from Microbeatlas

Aquatic Samples	190
Soil Samples	13
Animal Samples	144
Plant Samples
Total Samples	347

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Carboxylicivirga mesophila strain MEBiC 07026 16S ribosomal RNA gene, partial sequence	JQ672625	1445	GenBank ENA	1166478 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Carboxylicivirga mesophila JCM 18290	GCA_018271975	contig	GenBank ENA	1166478 tax ID	*
[Ref.: #66792]	Carboxylicivirga mesophila strain JCM 18290	1166478.3	wgs	PATRIC	1166478 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Carboxylicivirga mesophila strain JCM 18290 PATRIC: 1166478.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Carboxylicivirga mesophila strain JCM 18290 PATRIC: 1166478.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	91.499	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	73.471	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.982	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	66.659	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.633	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82.47	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18290, KCCM 42978

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Carboxylicivirga gen. nov. in the family Marinilabiliaceae with two novel species, Carboxylicivirga mesophila sp. nov. and Carboxylicivirga taeanensis sp. nov., and reclassification of Cytophaga fermentans as Saccharicrinis fermentans gen. nov., comb. nov.	Yang SH, Seo HS, Woo JH, Oh HM, Jang H, Lee JH, Kim SJ, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijs.0.053462-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Carboxylicivirga mesophila strain JCM 18290

Carboxylicivirga mesophila strain JCM 18290

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