Paludibacter jiangxiensis (KCTC 5844, CGMCC 1.5150, JCM 17480)

Name: Paludibacter jiangxiensis (KCTC 5844, CGMCC 1.5150, JCM 17480)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162026

Type strain

Culture col. no. KCTC 5844 CGMCC 1.5150 JCM 17480

NCBI tax ID(s) 681398

Special Collections JCM KCTC

Links

Paludibacter jiangxiensis JCM 17480 is a mesophilic prokaryote that was isolated from Rotted rice straw in rural paddy field.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 27224

KCTC 5844,JCM 17480

@ref 20215

Last LPSN update 2025-12-16 10:08:53

Domain Pseudomonadati

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Paludibacteraceae

Genus Paludibacter

Species Paludibacter jiangxiensis

Full scientific name Paludibacter jiangxiensis Qiu et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.9
125438		90.074
125438	negative	91.248

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.8
125438		90.064

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Rotted rice straw in rural paddy field	China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM161838v1 assembly for Paludibacter jiangxiensis NM7	contig	GCA_001618385	681398.8	681398	78.45

Genome browser: GCA_001618385

GC content

@ref	GC-content (mol%)	Method
67770	42.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paludibacter jiangxiensis NM7
NCBI: GCA_001618385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.80	no
125439	motility	BacteriaNetⓘ	yes	50.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	81.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paludibacter jiangxiensis NM7
NCBI: GCA_001618385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	91.25	no
125438	anaerobic	anaerobicⓘ	yes	66.51	no
125438	aerobic	aerobicⓘ	no	70.10	no
125438	spore-forming	spore-formingⓘ	no	90.06	no
125438	thermophilic	thermophileⓘ	no	92.50	no
125438	flagellated	motile2+ⓘ	no	90.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paludibacter jiangxiensis sp. nov., a strictly anaerobic, propionate-producing bacterium isolated from rice paddy field.	Qiu YL, Kuang XZ, Shi XS, Yuan XZ, Guo RB	Arch Microbiol	10.1007/s00203-013-0951-1	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paludibacter jiangxiensis (KCTC 5844, CGMCC 1.5150, JCM 17480)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001618385

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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