Name: Sphingobium sp. JCM 17495
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162027

Type strain:

Species: Sphingobium sp.

Culture col. no.: JCM 17495, FERM AP-20677, NBRC 103272

Strain history: E. Masai SYK-6 <-- Y. Katayama <-- Y. Yamasaki.

NCBI tax ID(s): 1113922 (species)

Other strains from Sphingobium sp.

S. sp. pk6, DSM 1192
S. sp. pk9, DSM 1198
S. sp. pk10, DSM 1199
S. sp. Leaf26, DSM 102723
S. sp. EGY1, DSM 29616
S. sp. CIP 111095
S. sp. JCM 13901
S. sp. JCM 13902
S. sp. JCM 13903
S. sp. JCM 17233
S. sp. JCM 17879
S. sp. JCM 19687
S. sp. JCM 28248
S. sp. JCM 28632
S. sp. JCM 28641
S. sp. JCM 28642
S. sp. JCM 28719

Section

Sphingobium sp. JCM 17495 is a mesophilic bacterium that was isolated from Pond for the treatment of waste liquor from a kraft pulp mill.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Full Scientific Name (PNU)	Sphingobium Takeuchi et al. 2001

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Pond for the treatment of waste liquor from a kraft pulp mill
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iwakuni, Yamaguchi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D16149 (>99% sequence identity) for Sphingobium from Microbeatlas

Aquatic Samples	624
Soil Samples	571
Animal Samples	250
Plant Samples	256
Total Samples	1701

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas sp. SYK6 gene for 16S rRNA, partial sequence	D16149	1446	ENA	502559 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17495, FERM AP-20677, NBRC 103272

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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