Name: Sphingobium sp. JCM 17495
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162027

Type strain:

Species: Sphingobium sp.

Culture col. no.: JCM 17495, FERM AP-20677, NBRC 103272

Strain history: E. Masai SYK-6 <-- Y. Katayama <-- Y. Yamasaki.

NCBI tax ID(s): 1113922 (species)

Special Collections

Other strains from Sphingobium sp.

Section

When using BacDive for research please cite our paper

Sphingobium sp. JCM 17495 is a mesophilic bacterium that was isolated from Pond for the treatment of waste liquor from a kraft pulp mill.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingobium*
	Full Scientific Name (LPSN)	Sphingobium Takeuchi et al. 2001

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Pond for the treatment of waste liquor from a kraft pulp mill
[Ref.: #67770]	Geographic location (country and/or sea, region)	Iwakuni, Yamaguchi Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence D16149 (>99% sequence identity) for Sphingobium from Microbeatlas

Aquatic Samples	624
Soil Samples	571
Animal Samples	250
Plant Samples	256
Total Samples	1701

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas sp. SYK6 gene for 16S rRNA, partial sequence	D16149	1446	GenBank ENA	502559 tax ID
[Ref.: #124043]	Sphingobium sp. NBRC 103272 gene for 16S rRNA, partial sequence.	AB681996	1412	GenBank ENA	1113922 tax ID	*

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17495, FERM AP-20677, NBRC 103272

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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