Flavobacterium ginsengiterrae (KCTC 23319, JCM 17337)

Name: Flavobacterium ginsengiterrae (KCTC 23319, JCM 17337)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162010

Type strain

Culture col. no. KCTC 23319 JCM 17337

NCBI tax ID(s) 871695

Special Collections JCM KCTC

History JCM <-- D.-C. Yang DCY55.

Links

Flavobacterium ginsengiterrae JCM 17337 is a bacterium that was isolated from Soil from a ginseng field.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27733

KCTC 23319,JCM 17337

@ref 20215

Last LPSN update 2026-05-29 08:44:49

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium ginsengiterrae

Full scientific name Flavobacterium ginsengiterrae Kim et al. 2025

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.679

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.286

Spore formation

@ref	Spore formation	Confidence
125439		99.818

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil from a ginseng field	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953978v1 assembly for Flavobacterium ginsengiterrae JCM 17337	scaffold	GCA_039539785	871695	75.57

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Flavobacterium ginsengiterrae strain DCY55 16S ribosomal RNA gene, partial sequence	HM776706	1401		871695

GC content

@ref	GC-content (mol%)	Method
67770	36.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953978v1 assembly for Flavobacterium ginsengiterrae JCM 17337
NCBI: GCA_039539785

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.29	no
125439	gram_stain	BacteriaNetⓘ	negative	99.68	no
125439	motility	BacteriaNetⓘ	yes	51.82	no
125439	spore_formation	BacteriaNetⓘ	no	99.82	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Validation List no. 224. Valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006801	2025
	Validation list no. 225: valid publication of new names and new combinations effectively published outside the IJSEM.	Oren A, Goker M.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006863	2025
Enzymology	DeepRiPP integrates multiomics data to automate discovery of novel ribosomally synthesized natural products.	Merwin NJ, Mousa WK, Dejong CA, Skinnider MA, Cannon MJ, Li H, Dial K, Gunabalasingam M, Johnston C, Magarvey NA.	Proc Natl Acad Sci U S A	10.1073/pnas.1901493116	2020
Genetics	Mining and Biosynthesis of Bioactive Lanthipeptides From Microorganisms.	Li C, Alam K, Zhao Y, Hao J, Yang Q, Zhang Y, Li R, Li A.	Front Bioeng Biotechnol	10.3389/fbioe.2021.692466	2021
Phylogeny	Flavobacterium ginsengiterrae sp. nov., isolated from a ginseng field.	Kim SR, Kim YJ, Nguyen NL, Min JW, Jeon JN, Yang DU, Yang DC	J Gen Appl Microbiol	10.2323/jgam.57.341	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium ginsengiterrae (KCTC 23319, JCM 17337)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039539785

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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