Name: Zhongshania marina JCM 17372
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162011

Type strain:

Species: Zhongshania marina

Culture col. no.: JCM 17372, KCCM 43273

Strain history: Y.-S. Oh DSW25-10.

NCBI tax ID(s): 2304603 (species)

Section

Zhongshania marina JCM 17372 is a mesophilic, Gram-negative bacterium that was isolated from Deep-sea water at a depth of 200-500 m.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Spongiibacteraceae*
	Genus	*Zhongshania*
	Species	**Zhongshania marina**
	Full Scientific Name (LPSN)	Zhongshania marina On et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %95.873

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Deep-sea water at a depth of 200-500 m
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HQ263243 (>99% sequence identity) for Spongiibacteraceae from Microbeatlas

Aquatic Samples	2008
Soil Samples	19
Animal Samples	56
Plant Samples	2
Total Samples	2085

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zhongshania marina 16S ribosomal RNA gene, partial sequence	HQ263243	1476	ENA	2304603 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Zhongshania marina DSW25-10	GCA_003725715	contig	GenBank	2304603 tax ID
[Ref.: #66792]	Zhongshania sp. DSW25-10	2304603.3	wgs	PATRIC	2304603 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Zhongshania sp. DSW25-10 PATRIC: 2304603.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Zhongshania sp. DSW25-10 PATRIC: 2304603.3
[Ref.: #69480]	motile	yes	82.706	no
[Ref.: #69480]	gram-positive	no	98.568	no
[Ref.: #69480]	anaerobic	no	98.747	no
[Ref.: #69480]	aerobic	yes	92.569	no
[Ref.: #69480]	halophile	yes	72.868	no
[Ref.: #69480]	spore-forming	no	95.172	no
[Ref.: #69480]	glucose-util	yes	51.702	no
[Ref.: #69480]	flagellated	yes	82.938	no
[Ref.: #69480]	thermophile	no	99.047	yes
[Ref.: #69480]	glucose-ferment	no	91.807	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17372, KCCM 43273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zhongshania marina sp. nov., isolated from deep-sea water.	On YG, Oh JS, Roh DH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003195	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Zhongshania sp. DSW25-10

Zhongshania sp. DSW25-10

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