Name: Hymenobacter antarcticus JCM 17217
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161973

Type strain:

Species: Hymenobacter antarcticus

Culture col. no.: JCM 17217, LMG 26017

Strain history: J. L. Klassen and J. M. Foght VUG-A42aa.

NCBI tax ID(s): 486270 (species)

SI-ID 371056

LMG 26017, JCM 17217

Special Collections

Other strains from Hymenobacter antarcticus

Section

Hymenobacter antarcticus JCM 17217 is a bacterium that was isolated from Basal ice.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Hymenobacter*
	Species	**Hymenobacter antarcticus**
	Full Scientific Name (LPSN)	Hymenobacter antarcticus Klassen and Foght 2011

Synonym

"Siccationidurans antarcticus"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	18 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Basal ice
[Ref.: #67770]	Geographic location (country and/or sea, region)	Victoria Upper Glacier
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence EU155012 (>99% sequence identity) for Siccationidurans antarcticus from Microbeatlas

Aquatic Samples	37
Soil Samples	86
Animal Samples	30
Plant Samples	6
Total Samples	159

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hymenobacter antarcticus strain VUG-A42aa 16S ribosomal RNA gene, partial sequence	EU155012	1438	GenBank ENA	486270 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17217, LMG 26017

[Ref.: #113480]

SI-ID 371056

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hymenobacter frigidus sp. nov., isolated from a glacier ice core.	Gu Z, Liu Y, Xu B, Wang N, Jiao N, Shen L, Liu H, Zhou Y, Liu X, Li J, Sun J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002262	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#113480

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371056.1 )

* These data were automatically processed and therefore are not curated

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