Name: Streptomyces caniferus DSM 41453
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16188

Type strain:

Species: Streptomyces caniferus

Culture col. no.: DSM 41453, ATCC 43699, INMI 377, JCM 6914, VKM Ac-68, BCRC 16851, CGMCC 4.1588, IFO 15389, NBRC 15389, NRRL B-16358

Strain history: INMI 377.

NCBI tax ID(s): 285557 (species)

SI-ID 41994

ATCC 43699, VKM Ac-68, DSM 41453, JCM 6914, IFO 15389, NRRL B-16358, AS 4.1588, NBRC 15389, BCRC 16851, CCRC 16851, CGMCC 4.1588

Special Collections

Section

Streptomyces caniferus DSM 41453 is a spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from Soil.

Gram-positive
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces caniferus**
	Full Scientific Name (LPSN)	Streptomyces caniferus (ex Krassilnikov 1970) Preobrazhenskaya 1986

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.704

[Ref.: #18688]	Colony color	Yellow
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 2

[Ref.: #18688]	Colony color	White
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 3

[Ref.: #18688]	Colony color	White
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 4

[Ref.: #18688]	Colony color	Beige
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 5

[Ref.: #18688]	Colony color	Beige
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 6

[Ref.: #18688]	Colony color	Beige
[Ref.: #18688]	Incubation period	10-14 days
[Ref.: #18688]	Cultivation medium used	ISP 7

[Ref.: #18688]	Multicellular complex forming ability	yes
[Ref.: #18688]	Multicellular complex name	Aerial Mycelium
[Ref.: #18688]	Multicellular complex color	White
[Ref.: #18688]	Medium Name (multicellularity)	ISP 2

[Ref.: #18688]	Multicellular complex forming ability	yes
[Ref.: #18688]	Multicellular complex name	Aerial Mycelium
[Ref.: #18688]	Multicellular complex color	Signal grey (7004)
[Ref.: #18688]	Medium Name (multicellularity)	ISP 3

[Ref.: #18688]	Multicellular complex forming ability	yes
[Ref.: #18688]	Multicellular complex name	Aerial Mycelium
[Ref.: #18688]	Multicellular complex color	Signal grey (7004)
[Ref.: #18688]	Medium Name (multicellularity)	ISP 4

[Ref.: #18688]	Multicellular complex forming ability	yes
[Ref.: #18688]	Multicellular complex name	Aerial Mycelium
[Ref.: #18688]	Multicellular complex color	Signal grey (7004)
[Ref.: #18688]	Medium Name (multicellularity)	ISP 5

[Ref.: #18688]	Multicellular complex forming ability	no
[Ref.: #18688]	Medium Name (multicellularity)	ISP 6

[Ref.: #18688]	Multicellular complex forming ability	yes
[Ref.: #18688]	Multicellular complex name	Aerial Mycelium
[Ref.: #18688]	Multicellular complex color	Signal grey (7004)
[Ref.: #18688]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10317]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10317]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #10317]	growth	28 °C
[Ref.: #18688]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %92.545

[Ref.: #18688]	Spore description	Formation of spore chains (retinaculiapetri b), spore surface smooth
[Ref.: #18688]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.299

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #18688]		NaCl		maximum	7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18688]	196	-	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18688]	282	not determinedn.d.	+	-	-	-	+	+	-	-	+	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Georgia
[Ref.: #67770]	Country ISO 3 Code	GEO
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence EF654099 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	88
Soil Samples	2400
Animal Samples	99
Plant Samples	1803
Total Samples	4390

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18688]	Biosafety level	1	German classification
[Ref.: #10317]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces caniferus strain AS 4.1588 16S ribosomal RNA gene, partial sequence	FJ406113	1362	GenBank ENA	285557 tax ID	*
[Ref.: #20218]	Streptomyces caniferus gene for 16S rRNA, partial sequence, strain: NBRC 15389	AB184640	1480	GenBank ENA	285557 tax ID	*
[Ref.: #20218]	Streptomyces caniferus strain NRRL B-16358 16S ribosomal RNA gene, partial sequence	EF654099	1473	GenBank ENA	285557 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces caniferus NBRC 15389	GCA_009811555	contig	GenBank ENA	285557 tax ID
[Ref.: #66792]	Streptomyces caniferus strain NBRC 15389	285557.3	wgs	PATRIC	285557 tax ID	*

[Ref.: #67770]

GC-content

71.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces caniferus strain NBRC 15389 PATRIC: 285557.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.704	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.347	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.299	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	92.545	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.1	no

Availability in culture collections External links

[Ref.: #10317]

Culture collection no.

DSM 41453, ATCC 43699, INMI 377, JCM 6914, VKM Ac-68, BCRC 16851, CGMCC 4.1588, IFO 15389, NBRC 15389, NRRL B-16358

[Ref.: #85250]

SI-ID 41994

References

#10317

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41453

#18688

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85250

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41994.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces caniferus strain NBRC 15389

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