Name: Halomarina oriensis JCM 16495
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161795

Type strain:

Species: Halomarina oriensis

Culture col. no.: JCM 16495, KCTC 4074

Strain history: K. Inoue KeC-11.

NCBI tax ID(s): 671145 (species)

Section

Halomarina oriensis JCM 16495 is a mesophilic archaeon that was isolated from Seawater aquarium at the Ocean Research Institute.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halobacteriaceae*
	Genus	*Halomarina*
	Species	**Halomarina oriensis**
	Full Scientific Name (LPSN)	Halomarina oriensis Inoue et al. 2011

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seawater aquarium at the Ocean Research Institute
[Ref.: #67770]	Geographic location (country and/or sea, region)	University of Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB519798 (>99% sequence identity) for Halomarina oriensis subclade from Microbeatlas

Aquatic Samples	134
Soil Samples	47
Animal Samples	6
Plant Samples
Total Samples	187

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halomarina oriensis gene for 16S ribosomal RNA, partial sequence	AB519798	1472	ENA	671145 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Halomarina oriensis JCM 16495	GCA_009791395	contig	GenBank	671145 tax ID	*

[Ref.: #67770]

GC-content

67.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halomarina oriensis JCM 16495 NCBI: GCA_009791395.1
[Ref.: #69480]	motile	no	80.518	no
[Ref.: #69480]	flagellated	no	97.381	no
[Ref.: #69480]	gram-positive	no	96.817	no
[Ref.: #69480]	anaerobic	no	97.52	no
[Ref.: #69480]	aerobic	yes	88.505	no
[Ref.: #69480]	halophile	yes	90.597	no
[Ref.: #69480]	spore-forming	no	93.343	no
[Ref.: #69480]	glucose-util	yes	89.39	no
[Ref.: #69480]	thermophile	no	93.236	yes
[Ref.: #69480]	glucose-ferment	no	85.086	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16495, KCTC 4074

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halomarina oriensis gen. nov., sp. nov., a halophilic archaeon isolated from a seawater aquarium.	Inoue K, Itoh T, Ohkuma M, Kogure K	Int J Syst Evol Microbiol	10.1099/ijs.0.020677-0	2010	*
Phylogeny	Halomarina rubra sp. nov., isolated from a marine solar saltern.	Zhou Y, Li Y, Lu ZZ, Cui HL	Arch Microbiol	10.1007/s00203-017-1420-z	2017	*
Phylogeny	Halomarina salina sp. nov., isolated from a marine solar saltern.	Xu WM, Xu JQ, Zhou Y, Li Y, Lu ZZ, Hou J, Zhu L, Cui HL	Antonie Van Leeuwenhoek	10.1007/s10482-016-0714-5	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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