Porphyromonas gingivicanis (ATCC 55562, JCM 15907)

Name: Porphyromonas gingivicanis (ATCC 55562, JCM 15907)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161695

Type strain

Culture col. no. ATCC 55562 JCM 15907

NCBI tax ID(s) 1236526 266762

Special Collections JCM

History M. Hirasawa NUM 301.

Links

Porphyromonas gingivicanis JCM 15907 is a mesophilic prokaryote that was isolated from Gingival crevicular fluids of beagles.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43619

ATCC 55562,JCM 15907

@ref 20215

Last LPSN update 2026-02-09 11:39:13

Domain Bacteria

Phylum Bacteroidota

Class Bacteroidia

Order Bacteroidales

Family Porphyromonadaceae

Genus Porphyromonas

Species Porphyromonas gingivicanis

Full scientific name Porphyromonas gingivicanis Hirasawa and Takada 1994

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	95.499
125439	negative	99.6

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.8
125438		94.25

Isolation, sampling and environmental information

Isolation

67770

Sample typeGingival crevicular fluids of beagles

Taxonmaps

69479

Global distribution of 16S sequence AB547662 (>99% sequence identity) for Porphyromonas from Microbeatlas

Aquatic Samples	104
Soil Samples	241
Animal Samples	8066
Plant Samples	88
Total Samples	8499

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM61458v1 assembly for Porphyromonas gingivicanis JCM 15907	contig	GCA_000614585	1236526.3	2585427888	1236526	54.46

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Porphyromonas gingivicanis gene for 16S ribosomal RNA, partial sequence, strain: JCM 15907	AB547662	1494	266762
124043	Porphyromonas gingivicanis gene for 16S rRNA, partial sequence, strain: ATCC 55562.	AB430828	1423	266762
124043	Porphyromonas gingivicanis strain ATCC 55562 16S ribosomal RNA gene, partial sequence.	DQ677835	1228	266762
124043	Porphyromonas gingivicanis strain ATCC 55562 16S-23S ribosomal RNA intergenic spacer, partial sequence.	AY546478	628	266762

GC content

@ref	GC-content (mol%)	Method
67770	44-45	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Porphyromonas gingivicanis JCM 15907
NCBI: GCA_000614585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	83.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Porphyromonas gingivicanis JCM 15907
PATRIC: 1236526.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	no
125438	anaerobic	anaerobicⓘ	yes	88.67	no
125438	spore-forming	spore-formingⓘ	no	94.25	no
125438	aerobic	aerobicⓘ	no	95.58	no
125438	thermophilic	thermophileⓘ	no	94.61	yes
125438	flagellated	motile2+ⓘ	no	86.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Noncontiguous finished genome sequence and description of Gabonia massiliensis gen. nov., sp. nov.	Mourembou G, Rathored J, Ndjoyi-Mbiguino A, Lekana-Douki JB, Fenollar F, Robert C, Fournier PE, Raoult D, Lagier JC.	New Microbes New Infect	10.1016/j.nmni.2015.11.002	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Porphyromonas gingivicanis (ATCC 55562, JCM 15907)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000614585

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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