Name: Phycicoccus jejuensis JCM 15616
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161611

Type strain:

Species: Phycicoccus jejuensis

Culture col. no.: JCM 15616, KCCM 42315, NBRC 106161, NRRL B-24460

Strain history: KCCM 42315 <-- S. D. Lee KSW2-15.

NCBI tax ID(s): 367299 (species)

SI-ID 295945

NRRL B-24460, JCM 15616

Special Collections

Section

Phycicoccus jejuensis JCM 15616 is a bacterium that was isolated from Dried seaweed on Gwakji beach.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Intrasporangiaceae*
	Genus	*Phycicoccus*
	Species	**Phycicoccus jejuensis**
	Full Scientific Name (LPSN)	Phycicoccus jejuensis Lee 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.197

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Dried seaweed on Gwakji beach
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB530140 (>99% sequence identity) for Phycicoccus jejuensis subclade from Microbeatlas

Aquatic Samples	63
Soil Samples	62
Animal Samples	218
Plant Samples	10
Total Samples	353

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phycicoccus jejuensis strain KSW2-15 16S ribosomal RNA gene, partial sequence	DQ345443	1413	GenBank ENA	367299 tax ID
[Ref.: #67770]	Phycicoccus jejuensis gene for 16S rRNA, partial sequence	AB530140	1481	GenBank ENA	367299 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Phycicoccus jejuensis NRRL B-24460	GCA_000720925	contig	GenBank ENA	367299 tax ID

[Ref.: #67770]

GC-content

74 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Phycicoccus jejuensis NRRL B-24460 NCBI: GCA_000720925.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.197	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.808	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.656	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	66.079	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	71.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 15616, KCCM 42315, NBRC 106161, NRRL B-24460

[Ref.: #113468]

SI-ID 295945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phycicoccus jejuensis gen. nov., sp. nov., an actinomycete isolated from seaweed.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64271-0	2006	*
Phylogeny	Phycicoccus endophyticus sp. nov., an endophytic actinobacterium isolated from Bruguiera gymnorhiza.	Liu SW, Xu M, Tuo L, Li XJ, Hu L, Chen L, Li RF, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000842	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113468

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID295945.1 )

* These data were automatically processed and therefore are not curated

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Phycicoccus jejuensis NRRL B-24460

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