Name: Cyclobacterium lianum JCM 14011
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161442

Type strain:

Species: Cyclobacterium lianum

Culture col. no.: JCM 14011, CGMCC 1.6102, NCIMB 14445

Strain history: S. Liu HY9.

NCBI tax ID(s): 388280 (species)

SI-ID 297178

CGMCC 1.6102, JCM 14011

Section

Cyclobacterium lianum JCM 14011 is a mesophilic bacterium that was isolated from Sediment from the Xijiang oilfield in the South China Sea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Cyclobacterium*
	Species	**Cyclobacterium lianum**
	Full Scientific Name (LPSN)	Cyclobacterium lianum Ying et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	no Confidence in %92.314

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.877
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sediment from the Xijiang oilfield in the South China Sea
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ534063 (>99% sequence identity) for Cyclobacterium lianum subclade from Microbeatlas

Aquatic Samples	146
Soil Samples	53
Animal Samples	27
Plant Samples	11
Total Samples	237

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cyclobacterium lianum strain HY9 16S ribosomal RNA gene, partial sequence	DQ534063	1485	ENA	388280 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Cyclobacterium lianum CGMCC 1.6102	GCA_900143075	scaffold	GenBank	388280 tax ID
[Ref.: #66792]	Cyclobacterium lianum strain CGMCC 1.6102	388280.3	wgs	PATRIC	388280 tax ID	*
[Ref.: #66792]	Cyclobacterium lianum CGMCC 1.6102	2617270779	draft	JGI IMG/M	388280 tax ID	*

[Ref.: #67770]

GC-content

45.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Cyclobacterium lianum CGMCC 1.6102 NCBI: GCA_900143075.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Cyclobacterium lianum strain CGMCC 1.6102 PATRIC: 388280.3
[Ref.: #69480]	gram-positive	no	97.682	no
[Ref.: #69480]	anaerobic	no	98.406	no
[Ref.: #69480]	halophile	no	67.003	no
[Ref.: #69480]	spore-forming	no	95.314	no
[Ref.: #69480]	glucose-util	yes	88.586	no
[Ref.: #69480]	aerobic	yes	91.361	no
[Ref.: #69480]	flagellated	no	97.172	no
[Ref.: #69480]	thermophile	no	98.791	yes
[Ref.: #69480]	motile	no	93.265	no
[Ref.: #69480]	glucose-ferment	no	89.41	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14011, CGMCC 1.6102, NCIMB 14445

[Ref.: #113404]

SI-ID 297178

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cyclobacterium lianum sp. nov., a marine bacterium isolated from sediment of an oilfield in the South China Sea, and emended description of the genus Cyclobacterium.	Ying JY, Wang BJ, Yang SS, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64510-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113404

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297178.1 )

* These data were automatically processed and therefore are not curated

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Cyclobacterium lianum CGMCC 1.6102

Cyclobacterium lianum strain CGMCC 1.6102

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