Name: Paracoccus sulfuroxidans JCM 14013
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161443

Type strain:

Species: Paracoccus sulfuroxidans

Culture col. no.: JCM 14013, CGMCC 1.5364

Strain history: S. Liu LW36.

NCBI tax ID(s): 384678 (species)

SI-ID 296984

LMG 24025, CGMCC 1.5364, JCM 14013

Section

Paracoccus sulfuroxidans JCM 14013 is a mesophilic bacterium that was isolated from Activated sludge of a wastewater-treatment bioreactor.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus sulfuroxidans**
	Full Scientific Name (LPSN)	Paracoccus sulfuroxidans Liu et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #69480]	Motility	no Confidence in %93.565

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Activated sludge of a wastewater-treatment bioreactor
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence DQ512861 (>99% sequence identity) for Paracoccus sulfuroxidans subclade from Microbeatlas

Aquatic Samples	510
Soil Samples	519
Animal Samples	1525
Plant Samples	37
Total Samples	2591

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paracoccus sulfuroxidans strain LW36 16S ribosomal RNA gene, partial sequence	DQ512861	1343	ENA	384678 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus sulfuroxidans CGMCC 1.5364	GCA_007830335	scaffold	GenBank	384678 tax ID	*
[Ref.: #66792]	Paracoccus sulfuroxidans strain CGMCC 1.5364	384678.24	wgs	PATRIC	384678 tax ID	*
[Ref.: #66792]	Paracoccus sulfuroxidans CGMCC 1.5364	2596583577	draft	JGI IMG/M	384678 tax ID	*

[Ref.: #67770]

GC-content

61.3 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paracoccus sulfuroxidans CGMCC 1.5364 NCBI: GCA_007830335.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus sulfuroxidans CGMCC 1.5364 NCBI: GCA_007830335.1
[Ref.: #69480]	motile	no	53.457	no
[Ref.: #69480]	flagellated	no	87.747	no
[Ref.: #69480]	gram-positive	no	97.932	no
[Ref.: #69480]	anaerobic	no	98.778	no
[Ref.: #69480]	aerobic	yes	91.929	no
[Ref.: #69480]	halophile	no	76.564	no
[Ref.: #69480]	spore-forming	no	96.252	no
[Ref.: #69480]	thermophile	no	96.482	yes
[Ref.: #69480]	glucose-util	yes	81.738	no
[Ref.: #69480]	glucose-ferment	no	90.649	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 14013, CGMCC 1.5364

[Ref.: #113405]

SI-ID 296984

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus sulfuroxidans sp. nov., a sulfur oxidizer from activated sludge.	Liu XY, Wang BJ, Jiang CY, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64548-0	2006	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113405

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID296984.1 )

* These data were automatically processed and therefore are not curated

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Paracoccus sulfuroxidans CGMCC 1.5364

Paracoccus sulfuroxidans CGMCC 1.5364

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