Name: Streptomyces viridochromogenes Tü 494
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16112

Type strain:

Species: Streptomyces viridochromogenes

Strain Designation: Tü 494

Culture col. no.: DSM 40736, JCM 4977, BCRC 12031

Strain history: KCC S-0977 <-- K. Isono <-- H. Zähner Tü 494.

NCBI tax ID(s): 591159 (strain), 1938 (species)

SI-ID 49781

DSM 40736, JCM 4977, CCRC 12031, BCRC 12031

Special Collections

DSMZ
JCM

Other strains from Streptomyces viridochromogenes

Section

Streptomyces viridochromogenes Tü 494 is a spore-forming bacterium that was isolated from Soil.

spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces viridochromogenes**
	Full Scientific Name (LPSN)	Streptomyces viridochromogenes (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonym

"Actinomyces viridochromogenes"

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9739]

Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9739]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.098
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9739]	Name of produced compound	phosphinothricyl-alanyl alanin
[Ref.: #9739]	Name of produced compound	phosphinothricin
[Ref.: #67770]	Name of produced compound	phosphinothricyl-alanyl-alanine

	Metabolite production	Metabolite	Production
[Ref.: #67770]		glufosinate ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Cameroon
[Ref.: #67770]	Country ISO 3 Code	CMR
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces viridochromogenes DSM 40736	GCA_000158955	scaffold	GenBank ENA	591159 tax ID	*
[Ref.: #66792]	Streptomyces viridochromogenes DSM 40736	591159.3	wgs	PATRIC	591159 tax ID	*
[Ref.: #66792]	Streptomyces viridochromogenes DSM 40736	645058855	draft	JGI IMG/M	591159 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces viridochromogenes DSM 40736 DSM 40736 NCBI: GCA_000158955.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces viridochromogenes DSM 40736 DSM 40736 NCBI: GCA_000158955.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.332	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.407	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.701	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.098	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #9739]

Culture collection no.

DSM 40736, JCM 4977, BCRC 12031

[Ref.: #85178]

SI-ID 49781

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Characterization of uronate dehydrogenases catalysing the initial step in an oxidative pathway.	Pick A, Schmid J, Sieber V	Microb Biotechnol	10.1111/1751-7915.12265	2015	*
Enzymology	Molecular and biochemical characteristics of the inulosucrase HugO from Streptomyces viridochromogenes DSM40736 (Tu494).	Frasch HJ, Leeuwen SSV, Dijkhuizen L	Microbiology (Reading)	10.1099/mic.0.000493	2017	*
Enzymology	An unusual UMP C-5 methylase in nucleoside antibiotic polyoxin biosynthesis.	Chen W, Li Y, Li J, Wu L, Li Y, Wang R, Deng Z, Zhou J	Protein Cell	10.1007/s13238-016-0289-y	2016	*
Genetics	Automated genome mining of ribosomal peptide natural products.	Mohimani H, Kersten RD, Liu WT, Wang M, Purvine SO, Wu S, Brewer HM, Pasa-Tolic L, Bandeira N, Moore BS, Pevzner PA, Dorrestein PC	ACS Chem Biol	10.1021/cb500199h	2014	*
Genetics	Unusual transformations in the biosynthesis of the antibiotic phosphinothricin tripeptide.	Blodgett JA, Thomas PM, Li G, Velasquez JE, van der Donk WA, Kelleher NL, Metcalf WW	Nat Chem Biol	10.1038/nchembio.2007.9	2007	*
Metabolism	Molecular cloning, sequence analysis, and heterologous expression of the phosphinothricin tripeptide biosynthetic gene cluster from Streptomyces viridochromogenes DSM 40736.	Blodgett JA, Zhang JK, Metcalf WW	Antimicrob Agents Chemother	10.1128/AAC.49.1.230-240.2005	2005	*

References

#9739

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40736

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49781.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces viridochromogenes DSM 40736 DSM 40736

Streptomyces viridochromogenes DSM 40736 DSM 40736

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