Name: Streptomyces violens DSM 40597
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16104

Type strain:

Species: Streptomyces violens

Culture col. no.: DSM 40597, ATCC 15898, CBS 451.65, CBS 787.72, IFO 12557, IFO 13486, IMET 43407, ISP 5597, JCM 3072, JCM 4852, NBRC 12557, NBRC 13486, NRRL B-3484, RIA 1447, RIA 565, BCRC 12540, CGMCC 4.1786, HAMBI 1073, INMI 1212, MTCC 6916, NCAIM B.01477, NRRL ISP-5597, PCM 2247, VKM Ac-586, VKM Ac-653

Strain history: KCC A-0072 <-- RIA 565 <-- INMI 1212.

NCBI tax ID(s): 66377 (species)

SI-ID 63615

ATCC 15898, IFO 12557, IFO 13486, DSM 40597, JCM 3072, CCRC 12540, JCM 4852, NRRL B-3484, VKM Ac-586, VKM Ac-653, CBS 451.65, IMET 43407, NBRC 12557, NBRC 13486, BCRC 12540, HAMBI 1073, NCAIM B.01477, CGMCC 4.1786, LMG 20303, CBS 787.72

Special Collections

Other strains from Streptomyces violens

Section

Streptomyces violens DSM 40597 is a spore-forming bacterium that builds an aerial mycelium and was isolated from Soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces violens**
	Full Scientific Name (LPSN)	Streptomyces violens (Kalakoutskii and Krassilnikov 1960) Goodfellow et al. 1987

Synonym

Chainia violens

Information on morphological and physiological properties Morphology

[Ref.: #19483]	Colony color	Brown
[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 2

[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 3

[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 4

[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 5

[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 6

[Ref.: #19483]	Incubation period	10-14 days
[Ref.: #19483]	Cultivation medium used	ISP 7

[Ref.: #19483]	Multicellular complex forming ability	yes
[Ref.: #19483]	Multicellular complex name	Aerial Mycelium
[Ref.: #19483]	Multicellular complex color	Beige
[Ref.: #19483]	Medium Name (multicellularity)	ISP 2

[Ref.: #19483]	Multicellular complex forming ability	yes
[Ref.: #19483]	Multicellular complex name	Aerial Mycelium
[Ref.: #19483]	Multicellular complex color	White
[Ref.: #19483]	Medium Name (multicellularity)	ISP 3

[Ref.: #19483]	Multicellular complex forming ability	yes
[Ref.: #19483]	Multicellular complex name	Aerial Mycelium
[Ref.: #19483]	Multicellular complex color	White
[Ref.: #19483]	Medium Name (multicellularity)	ISP 4

[Ref.: #19483]	Multicellular complex forming ability	yes
[Ref.: #19483]	Multicellular complex name	Aerial Mycelium
[Ref.: #19483]	Multicellular complex color	White
[Ref.: #19483]	Medium Name (multicellularity)	ISP 5

[Ref.: #19483]	Multicellular complex forming ability	no
[Ref.: #19483]	Medium Name (multicellularity)	ISP 6

[Ref.: #19483]	Multicellular complex forming ability	yes
[Ref.: #19483]	Multicellular complex name	Aerial Mycelium
[Ref.: #19483]	Multicellular complex color	White
[Ref.: #19483]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9673]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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[Ref.: #19483]

Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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		Temperature
[Ref.: #9673]	growth	28 °C
[Ref.: #19483]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19483]	Spore description	Formation of spore chains (retinaculiapetri), spore surface smooth, fragmentation
[Ref.: #19483]	Type of spore	spore
[Ref.: #19483]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.923

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19483]	arabinose ChEBI	-
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19483]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19483]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19483]	mannitol ChEBI	+
[Ref.: #19483]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19483]	raffinose ChEBI	-
[Ref.: #19483]	rhamnose ChEBI	+
[Ref.: #19483]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19483]	xylose ChEBI	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19483]	342	+	-	-	-	-	-	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	Armenia
[Ref.: #67770]	Country ISO 3 Code	ARM
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HQ244455 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	28
Soil Samples	379
Animal Samples	28
Plant Samples	3
Total Samples	438

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9673]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19483]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces violens strain CGMCC 4.1786 16S ribosomal RNA gene, partial sequence	HQ244455	1376	GenBank ENA	66377 tax ID	*
[Ref.: #20218]	Streptomyces violens 16S rRNA gene, type strain DSM 40597T	AJ621605	1498	GenBank ENA	66377 tax ID	*
[Ref.: #20218]	Streptomyces violens gene for 16S ribosomal RNA, partial sequence, strain: JCM 3072	D43977	121	GenBank ENA	66377 tax ID	*
[Ref.: #20218]	Streptomyces violens gene for 16S rRNA, partial sequence, strain: NBRC 12557	AB184104	1473	GenBank ENA	66377 tax ID	*
[Ref.: #20218]	Streptomyces violens gene for 16S rRNA, partial sequence, strain: NBRC 13486	AB184438	1474	GenBank ENA	66377 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces violens NRRL ISP-5597	GCA_000717745	contig	GenBank ENA	66377 tax ID

[Ref.: #67770]

GC-content

71.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces violens NRRL ISP-5597 NCBI: GCA_000717745.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.006	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.503	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.824	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.923	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82	no

Availability in culture collections External links

[Ref.: #9673]

Culture collection no.

DSM 40597, ATCC 15898, CBS 451.65, CBS 787.72, IFO 12557, IFO 13486, IMET 43407, ISP 5597, JCM 3072, JCM 4852, NBRC 12557, NBRC 13486, NRRL B-3484, RIA 1447, RIA 565, BCRC 12540, CGMCC 4.1786, HAMBI 1073, INMI 1212, MTCC 6916, NCAIM B.01477, NRRL ISP-5597, PCM 2247, VKM Ac-586, VKM Ac-653

[Ref.: #85170]

SI-ID 63615

References

#9673

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40597

#19483

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85170

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID63615.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces violens NRRL ISP-5597

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