Name: Psittacicella hinzii 111
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160776

Type strain:

Species: Psittacicella hinzii

Strain Designation: 111

Culture col. no.: DSM 18222, CCUG 52861, CCM 8842

Strain history: <- H. Christensen; 111

NCBI tax ID(s): 2028575 (species)

SI-ID 303015

CCUG 52861

Section

Psittacicella hinzii 111 is a mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from lung of dead budgerigar.

colony-forming
Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Psittacicellaceae*
	Genus	*Psittacicella*
	Species	**Psittacicella hinzii**
	Full Scientific Name (LPSN)	Psittacicella hinzii Xin et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67791]	Gram stain	negative

[Ref.: #67791]	Type of hemolysis	gamma
[Ref.: #67791]	Cultivation medium used	bovine blood medium

[Ref.: #67791]	Colony size	<0.5 mm
[Ref.: #67791]	Colony color	greyish tinge
[Ref.: #67791]	Colony shape	circular
[Ref.: #67791]	Incubation period	1 day
[Ref.: #67791]	Cultivation medium used	blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67714]

Culture medium

COLUMBIA BLOOD AGAR (DSMZ Medium 429)

[Ref.: #67714]

Culture medium growth

[Ref.: #67714]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67714]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67714]			growth	37 °C

[Ref.: #67714]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #67791]	D-mannitol ChEBI	-	builds acid from
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #67791]	D-mannose ChEBI	+	builds acid from
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #67791]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #67791]	maltose ChEBI	+	builds acid from
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #67791]	nitrate ChEBI	-	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #67791]	raffinose ChEBI	-	builds acid from
[Ref.: #67791]	sucrose ChEBI	+	builds acid from
[Ref.: #67791]	trehalose ChEBI	-	builds acid from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE, API NH
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API NH
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE, API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #67791]	acid phosphatase	+	3.1.3.2
[Ref.: #67791]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67791]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #67791]	alpha-fucosidase	-	3.2.1.51
[Ref.: #67791]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67791]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67791]	alpha-mannosidase	-	3.2.1.24
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #67791]	beta-galactosidase	-	3.2.1.23
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #67791]	beta-glucosidase	-	3.2.1.21
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #67791]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67791]	catalase	+	1.11.1.6
[Ref.: #67791]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #67791]	esterase (C 4)	-
[Ref.: #67791]	esterase Lipase (C 8)	-
[Ref.: #68377]	gamma-glutamyltransferase	-	2.3.2.2	* from API NH
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #67791]	leucine arylamidase	+	3.4.11.1
[Ref.: #67791]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #67791]	trypsin	-	3.4.21.4
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #67791]	urease	-	3.5.1.5
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH, API 20NE
[Ref.: #67791]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #67714]	24278	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #67714]	6248	+	+	+	+	-	-	-	+	-	-	-	-	-
[Ref.: #67714]	5762	-	+	+	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67714]	Sample type/isolated from	lung of dead budgerigar
[Ref.: #67714]	Country	Germany
[Ref.: #67714]	Country ISO 3 Code	DEU
[Ref.: #67714]	Continent	Europe

[Ref.: #67791]	Sample type/isolated from	lung of a dead budgerigar suffering from chock syndrome
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67714]	Psittacicella hinzii 16S ribosomal RNA gene, partial sequence	AF487721	1502	ENA	2028575 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67791]	Psittacicella hinzii 111	GCA_003585935	contig	GenBank	2028575 tax ID

[Ref.: #67791]

GC-content

35.4 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psittacicella hinzii 111 NCBI: GCA_003585935.1
[Ref.: #69480]	motile	no	91.33	no
[Ref.: #69480]	flagellated	no	96.977	no
[Ref.: #69480]	gram-positive	no	97.188	no
[Ref.: #69480]	anaerobic	no	90.202	no
[Ref.: #69480]	aerobic	no	94.865	no
[Ref.: #69480]	halophile	yes	65.649	no
[Ref.: #69480]	spore-forming	no	98.857	no
[Ref.: #69480]	glucose-util	yes	54.735	no
[Ref.: #69480]	thermophile	no	99.409	yes
[Ref.: #69480]	glucose-ferment	no	59.577	yes

Availability in culture collections External links

[Ref.: #67714]

Culture collection no.

DSM 18222, CCUG 52861, CCM 8842

[Ref.: #112994]

SI-ID 303015

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Bisgaard taxon 37 and taxon 44 as Psittacicella melopsittaci gen. nov., sp. nov., Psittacicella hinzii sp. nov. and Psittacicella gerlachiana sp. nov. within Psittacicellaceae fam. nov. of the order Pasteurellales.	Xin D, Bisgaard M, Busse HJ, Olsen RH, Hess C, Aalbaek B, Olsen JE, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003133	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67714

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18222

#67791

Di Xin, Magne Bisgaard, Hans-Jürgen Busse, Rikke H. Olsen, Claudia Hess, Bent Aalbæk, John E. Olsen, Henrik Christensen: Reclassification of Bisgaard taxon 37 and taxon 44 as Psittacicella melopsittaci gen. nov., sp. nov., Psittacicella hinzii sp. nov. and Psittacicella gerlachiana sp. nov. within Psittacicellaceae fam. nov. of the order Pasteurellales. IJSEM 69: 350 - 355 2019 ( DOI 10.1099/ijsem.0.003133 )

#68369

Automatically annotated from API 20NE .

#68377

Automatically annotated from API NH .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112994

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID303015.1 )

* These data were automatically processed and therefore are not curated

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