Name: Aestuariivirga litoralis DSM 105254
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160775

Type strain:

Species: Aestuariivirga litoralis

Culture col. no.: DSM 105254, KCTC 52945, NBRC 112960, SYSU M10001

Strain history: <- W.-J. Li, State Key Lab. for Biocontrol, Sun Yat-sen Univ., Guangzhou, People's Republic of China; SYSU M10001 <- X. Li

NCBI tax ID(s): 2650924 (species)

Section

Aestuariivirga litoralis DSM 105254 is an aerobe, psychrophilic, Gram-negative bacterium that forms irregular colonies and was isolated from freshwater-marine samples.

colony-forming
Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Aestuariivirgaceae*
	Genus	*Aestuariivirga*
	Species	**Aestuariivirga litoralis**
	Full Scientific Name (LPSN)	Aestuariivirga litoralis Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67778]	Gram stain	negative
[Ref.: #67778]	Cell length	1-1.8 µm
[Ref.: #67778]	Cell width	0.7-0.9 µm
[Ref.: #67778]	Cell shape	rod-shaped
[Ref.: #67778]	Motility	no

[Ref.: #67778]	Colony color	light beige
[Ref.: #67778]	Colony shape	irregular
[Ref.: #67778]	Cultivation medium used	Reasoner's 2A agar (R2A)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67713]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #67713]

Culture medium growth

[Ref.: #67713]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67713]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #67713]	growth	20 °C
[Ref.: #67778]	growth	20-37 °C
[Ref.: #67778]	optimum	28 °C

[Ref.: #67713]	Temperature range	psychrophilic
[Ref.: #67778]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #67778]			optimum	7
[Ref.: #67778]			growth	6-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67778]

Oxygen tolerance

aerobe

[Ref.: #67778]

Ability of spore formation

[Ref.: #67778]

Observation

Cannot tolerate NaCl in the growth medium.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67778]	(S)-lactate ChEBI	-	carbon source
[Ref.: #67778]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #67778]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #67778]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #67778]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #67778]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #67778]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #67778]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+	hydrolysis
[Ref.: #67778]	acetate ChEBI	-	carbon source
[Ref.: #67778]	acetoacetate ChEBI	-	carbon source
[Ref.: #67778]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #67778]	alpha-lactose ChEBI	-	carbon source
[Ref.: #67778]	bromosuccinate ChEBI	-	carbon source
[Ref.: #67778]	cellobiose ChEBI	-	carbon source
[Ref.: #67778]	cellulose ChEBI	-	hydrolysis
[Ref.: #67778]	citrate ChEBI	-	carbon source
[Ref.: #67778]	D-arabitol ChEBI	-	carbon source
[Ref.: #67778]	D-aspartate ChEBI	-	carbon source
[Ref.: #67778]	D-fructose ChEBI	-	carbon source
[Ref.: #67778]	D-fructose 6-phosphate ChEBI	-	carbon source
[Ref.: #67778]	D-fucose ChEBI	+	carbon source
[Ref.: #67778]	D-galactose ChEBI	+	carbon source
[Ref.: #67778]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #67778]	D-glucarate ChEBI	-	carbon source
[Ref.: #67778]	D-gluconate ChEBI	-	carbon source
[Ref.: #67778]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #67778]	D-glucuronate ChEBI	-	carbon source
[Ref.: #67778]	D-malate ChEBI	-	carbon source
[Ref.: #67778]	D-mannitol ChEBI	-	carbon source
[Ref.: #67778]	D-mannose ChEBI	-	carbon source
[Ref.: #67778]	D-serine ChEBI	-	carbon source
[Ref.: #67778]	D-sorbitol ChEBI	-	carbon source
[Ref.: #67778]	D-trehalose ChEBI	-	carbon source
[Ref.: #67778]	dextrin ChEBI	-	carbon source
[Ref.: #67778]	formate ChEBI	-	carbon source
[Ref.: #67778]	galactarate ChEBI	-	carbon source
[Ref.: #67778]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #67778]	gelatin ChEBI	-	hydrolysis
[Ref.: #67778]	gelatin ChEBI	-	carbon source
[Ref.: #67778]	gentiobiose ChEBI	-	carbon source
[Ref.: #67778]	glucose ChEBI	+	assimilation
[Ref.: #67778]	glucuronamide ChEBI	+	carbon source
[Ref.: #67778]	glycerol ChEBI	-	carbon source
[Ref.: #67778]	glycine-proline ChEBI	-	carbon source
[Ref.: #67778]	inosine ChEBI	-	carbon source
[Ref.: #67778]	L-alanine ChEBI	+	carbon source
[Ref.: #67778]	L-arginine ChEBI	-	carbon source
[Ref.: #67778]	L-aspartate ChEBI	-	carbon source
[Ref.: #67778]	L-fucose ChEBI	-	carbon source
[Ref.: #67778]	L-galactonic acid gamma-lactone ChEBI	-	carbon source
[Ref.: #67778]	L-glutamate ChEBI	-	carbon source
[Ref.: #67778]	L-histidine ChEBI	-	carbon source
[Ref.: #67778]	L-malate ChEBI	-	carbon source
[Ref.: #67778]	L-pyroglutamate ChEBI	-	carbon source
[Ref.: #67778]	L-rhamnose ChEBI	-	carbon source
[Ref.: #67778]	L-serine ChEBI	-	carbon source
[Ref.: #67778]	maltose ChEBI	-	carbon source
[Ref.: #67778]	melibiose ChEBI	-	carbon source
[Ref.: #67778]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #67778]	methyl beta-D-glucopyranoside ChEBI	-	carbon source
[Ref.: #67778]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #67778]	milk	-	assimilation
[Ref.: #67778]	myo-inositol ChEBI	-	carbon source
[Ref.: #67778]	N-acetyl-D-mannosamine ChEBI	-	carbon source
[Ref.: #67778]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #67778]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #67778]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #67778]	nitrate ChEBI	-	reduction
[Ref.: #67778]	pectin ChEBI	-	carbon source
[Ref.: #67778]	propionate ChEBI	-	carbon source
[Ref.: #67778]	quinate ChEBI	-	carbon source
[Ref.: #67778]	raffinose ChEBI	-	carbon source
[Ref.: #67778]	salicin ChEBI	-	carbon source
[Ref.: #67778]	stachyose ChEBI	+	carbon source
[Ref.: #67778]	starch ChEBI	-	hydrolysis
[Ref.: #67778]	sucrose ChEBI	-	carbon source
[Ref.: #67778]	turanose ChEBI	-	carbon source
[Ref.: #67778]	tween 20 ChEBI	-	hydrolysis
[Ref.: #67778]	tween 40 ChEBI	+	hydrolysis
[Ref.: #67778]	tween 40 ChEBI	-	carbon source
[Ref.: #67778]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67778]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #67778]		hydrogen sulfide ChEBI
[Ref.: #67778]		indole ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #67778]	acid phosphatase	+	3.1.3.2
[Ref.: #67778]	alkaline phosphatase	+	3.1.3.1
[Ref.: #67778]	alpha-galactosidase	-	3.2.1.22
[Ref.: #67778]	alpha-glucosidase	-	3.2.1.20
[Ref.: #67778]	alpha-mannosidase	-	3.2.1.24
[Ref.: #67778]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #67778]	beta-galactosidase	-	3.2.1.23
[Ref.: #67778]	beta-glucosidase	-	3.2.1.21
[Ref.: #67778]	beta-glucuronidase	-	3.2.1.31
[Ref.: #67778]	catalase	+	1.11.1.6
[Ref.: #67778]	chymotrypsin	+	3.4.4.5
[Ref.: #67778]	cystine arylamidase	+	3.4.11.3
[Ref.: #67778]	cytochrome oxidase	+	1.9.3.1
[Ref.: #67778]	esterase (C 4)	+
[Ref.: #67778]	esterase Lipase (C 8)	+
[Ref.: #67778]	leucine arylamidase	+	3.4.11.1
[Ref.: #67778]	lipase (C 14)	-
[Ref.: #67778]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #67778]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #67778]	trypsin	+	3.4.21.4
[Ref.: #67778]	urease	-	3.5.1.5
[Ref.: #67778]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #67778]

Fatty acid	Percentage
C19:0 cyclo w8c	50.7
C18:1 w7c and/or C18:1 w6c	21.4
C16:0	15
C18:0	2.5
C12:0	2.2
C18:1 w7c 11-Methyl	1.8
C18:1 2OH	1
C16:1 w7c / C16:1 w6c	0.7
C20:1 w7c	0.6
C20:0	0.5
C10:0 3OH	0.5
C17:0	0.5
C17:0 iso	0.5
C18:3 w6,9,12c	0.4
C14:0 2OH	0.3
C20:4 w6,9,12,15c	0.3
C12:0 iso	0.3
C17:0 anteiso	0.2
C14:0	0.2
C11:0 2OH	0.2
C20:0 iso	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67713]	Sample type/isolated from	freshwater-marine samples
[Ref.: #67713]	Geographic location (country and/or sea, region)	Guangdong province, Coastal of Pearl River Estuary
[Ref.: #67713]	Country	China
[Ref.: #67713]	Country ISO 3 Code	CHN
[Ref.: #67713]	Continent	Asia
[Ref.: #67713]	Geographic location	23.1065°/113.5950°

[Ref.: #67778]	Sample type/isolated from	water sample
[Ref.: #67778]	Geographic location (country and/or sea, region)	conjunct point of freshwater and sea water, located along the coastal region of Pearl River estuary, Guangdong Province
[Ref.: #67778]	Country	China
[Ref.: #67778]	Country ISO 3 Code	CHN
[Ref.: #67778]	Continent	Asia
[Ref.: #67778]	Geographic location	23.1089°/113.5950°
[Ref.: #67778]	Enrichment culture	R2A agar
[Ref.: #67778]	Enrichment culture composition	pH 7.0
[Ref.: #67778]	Enrichment culture duration	14 days
[Ref.: #67778]	Enrichment culture temperature	28 ̊C
[Ref.: #67778]	Isolation/enrichment procedure	The sample was diluted 100-fold with sterile water and 0.2 ml aliquots spread on Reasoner's 2A agar plates. The isolation plates were incubated at 28°C for 14 days.
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67778]	Aestuariivirga litoralis strain SYSU M10001 16S ribosomal RNA gene, partial sequence	MH371374	1499	ENA	2650924 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67778]	Aestuariivirga litoralis KCTC 52945	GCA_003234965	contig	GenBank	2650924 tax ID
[Ref.: #66792]	Rhizobiales bacterium KCTC 52945	2219703.3	wgs	PATRIC	2650924 tax ID	*
[Ref.: #66792]	Aestuariivirga litoralis KCTC 52945	2893929457	draft	JGI IMG/M	2650924 tax ID	*

[Ref.: #67778]

GC-content

65.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67713]

Culture collection no.

DSM 105254, KCTC 52945, NBRC 112960, SYSU M10001

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariivirga litoralis gen. nov., sp. nov., a proteobacterium isolated from a water sample, and proposal of Aestuariivirgaceae fam. nov.	Li X, Salam N, Li JL, Chen YM, Yang ZW, Han MX, Mou X, Xiao M, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003087	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67713

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105254

#67778

Xin Li, Nimaichand Salam, Jia-Ling Li, Yi-Min Chen, Zi-Wen Yang, Ming-Xian Han, Xiaozhen Mou, Min Xiao, Wen-Jun Li: Aestuariivirga litoralis gen. nov., sp. nov., a proteobacterium isolated from a water sample, and proposal of Aestuariivirgaceae fam. nov.. IJSEM 69: 299 - 306 2019 ( DOI 10.1099/ijsem.0.003087 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Aestuariivirga litoralis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF