Name: Kallipyga massiliensis Ph2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160745

Type strain:

Species: Kallipyga massiliensis

Strain Designation: Ph2

Culture col. no.: DSM 26229, CSUR P241

Strain history: <- P. Hugon, Timone Hospital, Marseille, France; Ph2

NCBI tax ID(s): 1472764 (species)

SI-ID 400340

DSM 26229

Special Collections

Section

Kallipyga massiliensis Ph2 is an anaerobe bacterium that was isolated from human feces, stool of a 26-year-old woman suffering from morbid obesity.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	[Eubacteriales, not assigned to family]
	Genus	*Kallipyga*
	Species	**Kallipyga massiliensis**
	Full Scientific Name (LPSN)	Kallipyga massiliensis Hugon et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90.705

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67662]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #67662]

Culture medium growth

[Ref.: #67662]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67662]

Culture medium composition

expand / minimize

[Ref.: #67662]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #67662]

Culture medium growth

[Ref.: #67662]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67662]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67662]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %94.197

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #67662]	12512	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67662]	Sample type/isolated from	human feces, stool of a 26-year-old woman suffering from morbid obesity
[Ref.: #67662]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #67662]	Country	France
[Ref.: #67662]	Country ISO 3 Code	FRA
[Ref.: #67662]	Continent	Europe
[Ref.: #67662]	Geographic location	43.2969°/5.3811°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JN837487 (>99% sequence identity) for Kallipyga massiliensis from Microbeatlas

Aquatic Samples	77
Soil Samples	81
Animal Samples	6931
Plant Samples	15
Total Samples	7104

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67662]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67662]	Kallipyga massiliensis ph2 16S ribosomal RNA gene, partial sequence	JN837487	1474	GenBank ENA	1118059 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kallipyga massiliensis ph2	GCA_000311985	scaffold	GenBank ENA	1118059 tax ID	*
[Ref.: #66792]	Kallipyga massiliensis ph2	2547132195	draft	JGI IMG/M	1118059 tax ID	*

[Ref.: #67662]

GC-content

51.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kallipyga massiliensis ph2 ph2 NCBI: GCA_000311985.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	82	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	94.197	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.478	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	74.511	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.367	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.705	no

Availability in culture collections External links

[Ref.: #67662]

Culture collection no.

DSM 26229, CSUR P241

[Ref.: #112971]

SI-ID 400340

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67662

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26229

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112971

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400340.1 )

* These data were automatically processed and therefore are not curated

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Kallipyga massiliensis ph2 ph2

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