Name: Catellatospora vulcania NEAU-JM1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160744

Type strain:

Species: Catellatospora vulcania

Strain Designation: NEAU-JM1

Culture col. no.: DSM 111419, CGMCC 4.7174, JCM 30054

Strain history: C. Liu; Northeast Agric. Univ., China; NEAU-JM1.

NCBI tax ID(s): 1460450 (species)

SI-ID 399307

DSM 111419

Special Collections

DSMZ
JCM

Section

Catellatospora vulcania NEAU-JM1 is a spore-forming bacterium that was isolated from Volcanic sediment.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Catellatospora*
	Species	**Catellatospora vulcania**
	Full Scientific Name (LPSN)	Catellatospora vulcania Jia et al. 2016

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 252 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #67660]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67660]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.855
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

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Observation

quinones: MK-9(H₄), MK-9(H₆), MK-8(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67660]	Sample type/isolated from	Volcanic sediment
[Ref.: #67660]	Geographic location (country and/or sea, region)	Longwan, Jilin Province, north China
[Ref.: #67660]	Country	China
[Ref.: #67660]	Country ISO 3 Code	CHN
[Ref.: #67660]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Volcanic sediment from Longwan
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jilin Province, north China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

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Global distribution of 16S sequence KF990993 (>99% sequence identity) for Catellatospora from Microbeatlas

Aquatic Samples	89
Soil Samples	939
Animal Samples	57
Plant Samples	287
Total Samples	1372

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Catellatospora vulcania strain NEAU-JM1 16S ribosomal RNA gene, partial sequence	KF990993	1510	GenBank ENA	1460450 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Catellatospora vulcania NEAU-JM1	GCA_009720385	scaffold	GenBank ENA	1460450 tax ID	*
[Ref.: #66792]	Catellatospora vulcania NEAU-JM1	2887516398	draft	JGI IMG/M	1460450 tax ID	*

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GC-content

70.7-71.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Catellatospora vulcania NEAU-JM1 NCBI: GCA_009720385.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catellatospora vulcania NEAU-JM1 NCBI: GCA_009720385.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.917	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.871	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.899	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.855	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #67660]

Culture collection no.

DSM 111419, CGMCC 4.7174, JCM 30054

[Ref.: #112970]

SI-ID 399307

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catellatospora tritici sp. nov., a novel cellulase-producing actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.) and emended description of the genus Catellatospora.	Yang Y, Qian L, Lin J, Qi C, Zhao T, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.005420	2022	*
Phylogeny	Catellatospora vulcania sp. nov. and Catellatospora paridis sp. nov., two novel actinobacteria isolated from volcanic sediment and the rhizosphere of Paris polyphylla.	Jia F, Guo S, Shen Y, Gao M, Liu C, Zhou S, Li J, Guan X, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-015-0608-y	2015	*
Phylogeny	Catellatospora sichuanensis sp. nov., a novel actinobacterium isolated from soil.	Liu C, Guo Y, Li L, Wang X, Lin J, Wang X, Li J, Chu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004175	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67660

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111419

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112970

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399307.1 )

* These data were automatically processed and therefore are not curated

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