Name: Acidihalobacter yilgarnensis F5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160601

Type strain:

Species: Acidihalobacter yilgarnensis

Strain Designation: F5

Culture col. no.: DSM 105917, JCM 32255

Strain history: <- E. Watkin, Curtin Univ., Perth, Australia; F5 <- F. Sandow {2011}

NCBI tax ID(s): 2819280 (species)

SI-ID 405788

DSM 105917

Section

Acidihalobacter yilgarnensis F5 is a mesophilic, motile bacterium that was isolated from Acidic saline drain.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Acidihalobacter*
	Species	**Acidihalobacter yilgarnensis**
	Full Scientific Name (LPSN)	Acidihalobacter yilgarnensis Khaleque et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #69480]	Motility	yes Confidence in %93.383

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67509]

Culture medium

ACIDIHALOBACTER FERROOXIDANS MEDIUM (DSMZ Medium 1321)

[Ref.: #67509]

Culture medium growth

[Ref.: #67509]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67509]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67509]			growth	30 °C

[Ref.: #67509]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67509]	Sample type/isolated from	Acidic saline drain
[Ref.: #67509]	Geographic location (country and/or sea, region)	Yilgarn Crater, Western Australia
[Ref.: #67509]	Country	Australia
[Ref.: #67509]	Country ISO 3 Code	AUS
[Ref.: #67509]	Continent	Australia and Oceania
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX250214 (>99% sequence identity) for Acidihalobacter from Microbeatlas

Aquatic Samples	91
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	98

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #67509]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67509]	Acidihalobacter yilgarnenesis strain F5 16S ribosomal RNA gene, partial sequence	KX250214	1404	ENA	2819280 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidihalobacter yilgarnensis F5	GCA_001753245	complete	GenBank	2819280 tax ID	*

[Ref.: #67509]

GC-content

59.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidihalobacter yilgarnensis F5 NCBI: GCA_001753245.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidihalobacter yilgarnensis F5 NCBI: GCA_001753245.1
[Ref.: #69480]	flagellated	yes	54.308	no
[Ref.: #69480]	gram-positive	no	98.774	no
[Ref.: #69480]	anaerobic	no	94.998	no
[Ref.: #69480]	aerobic	no	63.989	no
[Ref.: #69480]	halophile	no	82.931	no
[Ref.: #69480]	spore-forming	no	92.275	no
[Ref.: #69480]	glucose-util	yes	63.419	no
[Ref.: #69480]	thermophile	no	97.785	yes
[Ref.: #69480]	motile	yes	90.391	no
[Ref.: #69480]	glucose-ferment	no	83.991	no

Availability in culture collections External links

[Ref.: #67509]

Culture collection no.

DSM 105917, JCM 32255

[Ref.: #112839]

SI-ID 405788

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.	Khaleque HN, Gonzalez C, Johnson DB, Kaksonen AH, Holmes DS, Watkin ELJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004519	2020	*
	Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus.	Boase K, Gonzalez C, Vergara E, Neira G, Holmes D, Watkin E	Front Microbiol	10.3389/fmicb.2022.848410	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67509

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105917

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112839

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405788.1 )

* These data were automatically processed and therefore are not curated

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