Acidihalobacter yilgarnensis (DSM 105917, JCM 32255, F5)

Name: Acidihalobacter yilgarnensis (DSM 105917, JCM 32255, F5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160601

Type strain

Strain Designation F5

Culture col. no. DSM 105917 JCM 32255 F5

NCBI tax ID(s) 2819280

Special Collections DSMZ JCM

History <- E. Watkin, Curtin Univ., Perth, Australia; F5 <- F. Sandow; {2011}

Links

Acidihalobacter yilgarnensis F5 is a bacterium that was isolated from Acidic saline drain.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405788

JCM 32255,DSM 105917

@ref 20215

Last LPSN update 2026-02-09 11:38:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Chromatiales

Family Ectothiorhodospiraceae

Genus Acidihalobacter

Species Acidihalobacter yilgarnensis

Full scientific name Acidihalobacter yilgarnensis Khaleque et al. 2020

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.6
125438	negative	95.994

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67509	ACIDIHALOBACTER FERROOXIDANS MEDIUM (DSMZ Medium 1321)		Medium recipe at MediaDive	Name: ACIDIHALOBACTER FERROOXIDANS MEDIUM (DSMZ Medium 1321; with strain-specific modifications) Composition: NaCl 14.7059 g/l FeSO4 x 7 H2O 13.6275 g/l MgSO4 x 7 H2O 0.392156 g/l K2S4O6 0.294118 g/l (NH4)2SO4 0.196078 g/l K2HPO4 0.0980391 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67509	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		97.4
125438		91.051

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67509	Acidic saline drain	Yilgarn Crater, Western Australia	Australia	AUS	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence KX250214 (>99% sequence identity) for Acidihalobacter from Microbeatlas

Aquatic Samples	91
Soil Samples	5
Animal Samples	2
Plant Samples
Total Samples	98

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67509	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM175324v1 assembly for Acidihalobacter yilgarnensis F5	complete	GCA_001753245	2721755456	2819280	92.02

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67509	Acidihalobacter yilgarnensis strain F5 16S ribosomal RNA gene, partial sequence	KX250214	1404		2819280

GC content

@ref	GC-content (mol%)	Method
67509	59.9	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acidihalobacter yilgarnensis F5
NCBI: GCA_001753245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.40	no
125439	motility	BacteriaNetⓘ	yes	77.10	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	86.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acidihalobacter yilgarnensis F5
NCBI: GCA_001753245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.99	no
125438	anaerobic	anaerobicⓘ	no	81.33	no
125438	aerobic	aerobicⓘ	yes	55.00	no
125438	spore-forming	spore-formingⓘ	no	91.05	no
125438	thermophilic	thermophileⓘ	no	93.40	yes
125438	flagellated	motile2+ⓘ	yes	72.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus.	Boase K, Gonzalez C, Vergara E, Neira G, Holmes D, Watkin E	Front Microbiol	10.3389/fmicb.2022.848410	2022
Phylogeny	Genome-based classification of Acidihalobacter prosperus F5 (=DSM 105917=JCM 32255) as Acidihalobacter yilgarnensis sp. nov.	Khaleque HN, Gonzalez C, Johnson DB, Kaksonen AH, Holmes DS, Watkin ELJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.004519	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67509	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105917
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acidihalobacter yilgarnensis (DSM 105917, JCM 32255, F5)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001753245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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