Name: Anoxybacillus sp. SK3-4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 160596

Type strain:

Species: Anoxybacillus sp.

Strain Designation: SK3-4

Culture col. no.: DSM 28779

Strain history: <- K. M. Goh, UTM, Fac, of Bioscs. and Med. Eng., Skudai, Johor, Malaysia; SK3-4 <- Y. Y. Chai and K. M. Goh

NCBI tax ID(s): 1872573 (species)

SI-ID 405596

DSM 28779

Special Collections

DSMZ

Other strains from Anoxybacillus sp.

Section

Anoxybacillus sp. SK3-4 is a spore-forming bacterium that was isolated from water sample.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Anoxybacillus*
	Full Scientific Name (LPSN)	Anoxybacillus Pikuta et al. 2000

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67504]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #67504]

Culture medium growth

[Ref.: #67504]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67504]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67504]			growth	55 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67504]	Sample type/isolated from	water sample
[Ref.: #67504]	Geographic location (country and/or sea, region)	Perak, Sungai Klah hot spring
[Ref.: #67504]	Country	Malaysia
[Ref.: #67504]	Country ISO 3 Code	MYS
[Ref.: #67504]	Continent	Asia
[Ref.: #67504]	Geographic location	3.9966°/101.3930°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence GQ184213 (>99% sequence identity) for Anoxybacillus from Microbeatlas

Aquatic Samples	335
Soil Samples	183
Animal Samples	1423
Plant Samples	87
Total Samples	2028

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67504]	Anoxybacillus sp. SK3-4 16S ribosomal RNA gene, partial sequence	GQ184213	1522	GenBank ENA	265546 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anoxybacillus sp. SK3-4	654421.3	wgs	PATRIC	265546 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anoxybacillus sp. SK3-4 PATRIC: 654421.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	77.125	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	76.877	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	89.838	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	50.736	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	71.357	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	76.729	no

Availability in culture collections External links

[Ref.: #67504]

Culture collection no.

DSM 28779

[Ref.: #112835]

SI-ID 405596

Literature:

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Effects of single and co-immobilization on the product specificity of type I pullulanase from Anoxybacillus sp. SK3-4.	Kahar UM, Chan KG, Sani MH, Mohd Noh NI, Goh KM	Int J Biol Macromol	10.1016/j.ijbiomac.2017.06.054	2017	*
Enzymology	Immobilization of alpha-Amylase from Anoxybacillus sp. SK3-4 on ReliZyme and Immobead Supports.	Kahar UM, Sani MH, Chan KG, Goh KM	Molecules	10.3390/molecules21091196	2016	*
Metabolism	Characterization of a type I pullulanase from Anoxybacillus sp. SK3-4 reveals an unusual substrate hydrolysis.	Kahar UM, Ng CL, Chan KG, Goh KM	Appl Microbiol Biotechnol	10.1007/s00253-016-7451-6	2016	*
Enzymology	A high molecular-mass Anoxybacillus sp. SK3-4 amylopullulanase: characterization and its relationship in carbohydrate utilization.	Kahar UM, Chan KG, Salleh MM, Hii SM, Goh KM	Int J Mol Sci	10.3390/ijms140611302	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67504

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28779

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112835

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405596.1 )

* These data were automatically processed and therefore are not curated

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