Name: Streptomyces thermoviolaceus subsp. apingens MB-R89
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16045

Type strain:

Species: Streptomyces thermoviolaceus subsp. apingens

Strain Designation: MB-R89, MB-R₈₉

Culture col. no.: DSM 41392, ATCC 19994, CBS 140.67, ETH 25786, JCM 4312, NCIMB 10077, CGMCC 4.1499, HUT 6603, IFO 15459, KACC 20093, NBRC 15459

Strain history: KCC S-0312 <-- A. Henssen R₈₉ (A₃₄).

NCBI tax ID(s): 66859 (subspecies)

SI-ID 389319

ATCC 19994, DSM 41392, JCM 4312, NCIMB 10077, IFO 15459, HUT 6603, NBRC 15459, KACC 20093, CGMCC 4.1499, CBS 140.67

Other strains from Streptomyces thermoviolaceus subsp. apingens

S. thermoviolaceus subsp. apingens MB-C19, MB-C₁₉, ...
S. thermoviolaceus subsp. apingens MB-C20, MB-C₂₀, ...
S. thermoviolaceus subsp. apingens MB-C6, MB-C₆, DSM 41393
S. thermoviolaceus subsp. apingens MB-C12, MB-C₁₂, ...
S. thermoviolaceus subsp. apingens MB-C14, MB-C₁₄, ...

Section

Streptomyces thermoviolaceus subsp. apingens MB-R89 is a spore-forming, thermophilic bacterium that was isolated from fresh cow manure.

spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces thermoviolaceus subsp. apingens**
	Full Scientific Name (LPSN)	Streptomyces thermoviolaceus subsp. apingens Henssen 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.601

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10261]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10261]

Culture medium growth

[Ref.: #10261]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10261]

Culture medium composition

expand / minimize

[Ref.: #10261]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #10261]

Culture medium growth

[Ref.: #10261]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10261]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #10261]			growth	45 °C
[Ref.: #67770]			growth	45 °C

[Ref.: #10261]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10261]	Sample type/isolated from	fresh cow manure

[Ref.: #67770]	Sample type/isolated from	Fresh horse-swine mixed manure
[Ref.: #67770]	Geographic location (country and/or sea, region)	Berlin
[Ref.: #67770]	Country	Germany
[Ref.: #67770]	Country ISO 3 Code	DEU
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10261]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #10261]	S.thermoviolaceus 16S rRNA gene	Z68095	1483	ENA	66859 tax ID
[Ref.: #20218]	Streptomyces thermoviolaceus subsp. apingens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4312	D44050	121	ENA	66859 tax ID	*
[Ref.: #20218]	Streptomyces thermoviolaceus subsp. apingens gene for 16S rRNA, partial sequence, strain: NBRC 15459	AB184685	1468	ENA	66859 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. apingens JCM 4312	GCA_014649255	scaffold	GenBank	66859 tax ID	*
[Ref.: #66792]	Streptomyces thermoviolaceus subsp. apingens strain JCM 4312	66859.3	wgs	PATRIC	66859 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces thermoviolaceus subsp. apingens strain JCM 4312 PATRIC: 66859.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces thermoviolaceus subsp. apingens JCM 4312 NCBI: GCA_014649255.1
[Ref.: #69480]	flagellated	no	97.828	no
[Ref.: #69480]	gram-positive	yes	91.755	no
[Ref.: #69480]	anaerobic	no	98.887	no
[Ref.: #69480]	aerobic	yes	90.872	no
[Ref.: #69480]	halophile	no	89.608	no
[Ref.: #69480]	spore-forming	yes	95.656	no
[Ref.: #69480]	glucose-util	yes	88.28	no
[Ref.: #69480]	thermophile	yes	50.58	yes
[Ref.: #69480]	motile	no	93.457	no
[Ref.: #69480]	glucose-ferment	no	89.651	no

Availability in culture collections External links

[Ref.: #10261]

Culture collection no.

DSM 41392, ATCC 19994, CBS 140.67, ETH 25786, JCM 4312, NCIMB 10077, CGMCC 4.1499, HUT 6603, IFO 15459, KACC 20093, NBRC 15459

[Ref.: #85118]

SI-ID 389319

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of four subspecies in the genus Streptomyces to Streptomyces rubradiris sp. nov., Streptomyces asoensis sp. nov., Streptomyces fructofermentans sp. nov. and Streptomyces ossamyceticus sp. nov.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.005078	2021	*

References

#10261

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41392

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85118

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389319.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces thermoviolaceus subsp. apingens strain JCM 4312

Streptomyces thermoviolaceus subsp. apingens JCM 4312

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