Nitratidesulfovibrio liaohensis (DSM 107637, CGMCC 1.5227, XJ01)

Name: Nitratidesulfovibrio liaohensis (DSM 107637, CGMCC 1.5227, XJ01)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160433

Type strain

Strain Designation XJ01

Culture col. no. DSM 107637 CGMCC 1.5227 XJ01

NCBI tax ID(s) 2604158

Special Collections DSMZ

History <- Y.Y. Wan, China University of Petroleum-Bei Jing; XJ01

Links

Nitratidesulfovibrio liaohensis XJ01 is a bacterium that was isolated from extracted fluids at wellhead.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400686

DSM 107637

@ref 20215

Last LPSN update 2026-02-09 11:38:53

Domain Bacteria

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Nitratidesulfovibrio

Species Nitratidesulfovibrio liaohensis

Full scientific name Nitratidesulfovibrio liaohensis (Wan et al. 2021) Park et al. 2023

Synonyms (1)

Cupidesulfovibrio liaohensis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.07

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67341	DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (POSTGATE) MEDIUM (DSMZ Medium 63) Composition: MgSO4 x 7 H2O 2.0 g/l Na-DL-lactate 2.0 g/l NH4Cl 1.0 g/l Yeast extract 1.0 g/l Na2SO4 1.0 g/l FeSO4 x 7 H2O 0.5 g/l K2HPO4 0.5 g/l CaCl2 x 2 H2O 0.1 g/l Na-thioglycolate 0.1 g/l Ascorbic acid 0.1 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67341	positive	growth	35

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		93.4

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67341	extracted fluids at wellhead	Liao He oilfield at Liao He province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence MK260014 (>99% sequence identity) for Desulfovibrio from Microbeatlas

Aquatic Samples	37
Soil Samples	4
Animal Samples	34
Plant Samples	14
Total Samples	89

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM1168207v1 assembly for Nitratidesulfovibrio liaohensis XJ01	contig	GCA_011682075	2604158.3	2899433461	2604158

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67341	Nitratidesulfovibrio liaohensis strain XJ01 16S ribosomal RNA gene, partial sequence	MK260014	1551		2604158

GC content

@ref	GC-content (mol%)	Method
67341	64.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cupidesulfovibrio liaohensis XJ01
NCBI: GCA_011682075

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.40	no
125439	motility	BacteriaNetⓘ	yes	63.10	no
125439	gram_stain	BacteriaNetⓘ	negative	79.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cupidesulfovibrio liaohensis XJ01
NCBI: GCA_011682075.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.07	no
125438	anaerobic	anaerobicⓘ	yes	79.04	no
125438	aerobic	aerobicⓘ	no	84.82	no
125438	spore-forming	spore-formingⓘ	no	83.93	no
125438	thermophilic	thermophileⓘ	no	90.47	yes
125438	flagellated	motile2+ⓘ	yes	79.64	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Cupidesulfovibrio liaohensis gen. nov., sp. nov., a novel sulphate-reducing bacterium isolated from an oil reservoir and reclassification of Desulfovibrio oxamicus and Desulfovibrio termitidis as Cupidesulfovibrio oxamicus comb. nov. and Cupidesulfovibrio termitidis comb. nov.	Wan YY, Luo N, Liu XL, Lai QL, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004618	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67341	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107637
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nitratidesulfovibrio liaohensis (DSM 107637, CGMCC 1.5227, XJ01)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_011682075

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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