Name: Ghiorsea bivora TAG-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160328

Type strain:

Species: Ghiorsea bivora

Strain Designation: TAG-1

Culture col. no.: DSM 103937, NCMA B5, JCM 31637

Strain history: D. Emerson; Bigelow Lab. for Ocean Sci., USA; TAG-1.

NCBI tax ID(s): 1485545 (species)

Section

Ghiorsea bivora TAG-1 is a mesophilic, Gram-negative bacterium that was isolated from Microbial iron mat, TAG hydrothermal vent field.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Mariprofundales*
	Family	[Mariprofundales, not assigned to family]
	Genus	"Ghiorsea"
	Species	"Ghiorsea bivora"
	Full Scientific Name (LPSN)	Ghiorsea bivora Mori et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67231]

Culture medium

GHIORSEA MEDIUM (DSMZ Medium 1743)

[Ref.: #67231]

Culture medium growth

[Ref.: #67231]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #67231]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #67231]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67231]	Sample type/isolated from	Microbial iron mat, TAG hydrothermal vent field
[Ref.: #67231]	Geographic location (country and/or sea, region)	Atlantic Ocean, Mid-Atlantic Ridge
[Ref.: #67231]	Country	International waters
[Ref.: #67231]	Geographic location	26.1627°/-44.7774°

[Ref.: #67770]	Sample type/isolated from	Iron-rich microbial mat associated with diffuse hydrothermal venting at the TAG hydrothermal vent site on the Mid-Atlantic Ridge
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KX388182 (>99% sequence identity) for Ghiorsea bivora subclade from Microbeatlas

Aquatic Samples	483
Soil Samples	25
Animal Samples	8
Plant Samples
Total Samples	516

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67231]	Zeta proteobacterium TAG1 16S ribosomal RNA gene, partial sequence	KX388182	1421	ENA	1485545 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ghiorsea bivora TAG-1	GCA_000744415	scaffold	GenBank	1485545 tax ID
[Ref.: #66792]	Ghiorsea bivora TAG-1	2582580733	draft	JGI IMG/M	1485545 tax ID	*

[Ref.: #67770]

GC-content

43.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ghiorsea bivora TAG-1 NCBI: GCA_000744415.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #67231]

Culture collection no.

DSM 103937, NCMA B5, JCM 31637

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Horizontal acquisition of hydrogen conversion ability and other habitat adaptations in the Hydrogenovibrio strains SP-41 and XCL-2.	Gonnella G, Adam N, Perner M	BMC Genomics	10.1186/s12864-019-5710-5	2019	*
Genetics	Genomic Insights into Two Novel Fe(II)-Oxidizing Zetaproteobacteria Isolates Reveal Lifestyle Adaption to Coastal Marine Sediments.	Blackwell N, Bryce C, Straub D, Kappler A, Kleindienst S	Appl Environ Microbiol	10.1128/AEM.01160-20	2020	*
Phylogeny	Physiological and ecological implications of an iron- or hydrogen-oxidizing member of the Zetaproteobacteria, Ghiorsea bivora, gen. nov., sp. nov.	Mori JF, Scott JJ, Hager KW, Moyer CL, Kusel K, Emerson D	ISME J	10.1038/ismej.2017.132	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67231

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103937

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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