Gordonia pseudamarae (DSM 43602)

Name: Gordonia pseudamarae (DSM 43602)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 160313

Type strain

Culture col. no. DSM 43602

NCBI tax ID(s) 2831662

Special Collections DSMZ

Links

Gordonia pseudamarae DSM 43602 is a bacterium of the family Gordoniaceae.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 396991

DSM 112172,JCM 35249,DSM 43602

@ref 20215

Last LPSN update 2026-05-29 08:44:24

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Gordoniaceae

Genus Gordonia

Species Gordonia pseudamarae

Full scientific name Gordonia pseudamarae Riesco et al. 2022

Synonyms (1)

"Gordonia pseudoamarae"

BacDive ID	Other strains from **Gordonia pseudamarae** (1)	Type strain
174781	G. pseudamarae DSM 113993, Ben 371

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	95.981
125439		92.588
125438		93.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
67216	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
67216	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.015

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
67216	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2527367v1 assembly for Gordonia pseudamarae CON9	complete	GCA_025273675	2831662.7	8076254771	2831662	98.27

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2527367v1 assembly for Gordonia pseudamarae CON9
BV-BRC: 2831662.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.02	no
125439	gram_stain	BacteriaNetⓘ	positive	95.98	no
125439	motility	BacteriaNetⓘ	no	92.59	no
125439	spore_formation	BacteriaNetⓘ	yes	39.64	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gordonia pseudoamarae strain CON9
PATRIC: 2831662.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.84	no
125438	anaerobic	anaerobicⓘ	no	96.84	no
125438	spore-forming	spore-formingⓘ	no	54.83	no
125438	aerobic	aerobicⓘ	yes	86.99	no
125438	thermophilic	thermophileⓘ	no	95.39	yes
125438	flagellated	motile2+ⓘ	no	93.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Gordonia pseudamarae sp. nov., a home for novel actinobacteria isolated from stable foams on activated sludge wastewater treatment plants.	Riesco R, Rose JJA, Batinovic S, Petrovski S, Sanchez-Juanes F, Seviour RJ, Goodfellow M, Trujillo ME.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005547	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67216	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43602
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gordonia pseudamarae (DSM 43602)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_025273675

Genome-based predictions

Predictions

Literature

Literature

References

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