Name: Mycobacterium helveticum 16-83
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160123

Type strain:

Species: Mycobacterium helveticum

Strain Designation: 16-83

Culture col. no.: DSM 109965, ITM 501047, ITM 2019-02457

Strain history: <- G. Ghielmetti, Univ. Zurich, Inst. Food Safety & Hygiene; 16-83 <- U. Friedel, Univ. Zurich, Inst. Food Safety & Hygiene;

NCBI tax ID(s): 1785 (species)

SI-ID 405761

DSM 109965

Section

Mycobacterium helveticum 16-83 is a mesophilic bacterium that was isolated from lymph node of sow.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium helveticum**
	Full Scientific Name (LPSN)	Mycobacterium helveticum Ghielmetti et al. 2021

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67027]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #67027]

Culture medium growth

[Ref.: #67027]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67027]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67027]			growth	37 °C

[Ref.: #67027]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67027]	Sample type/isolated from	lymph node of sow
[Ref.: #67027]	Geographic location (country and/or sea, region)	Canton of Lucerne
[Ref.: #67027]	Country	Switzerland
[Ref.: #67027]	Country ISO 3 Code	CHE
[Ref.: #67027]	Continent	Europe
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67027]	Mycobacterium sp. strain 16-83 16S ribosomal RNA gene, partial sequence	MT133249	1506	ENA	2592811 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium helveticum 16-83	GCA_007714205	contig	GenBank	2592811 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium helveticum 16-83 NCBI: GCA_007714205.1
[Ref.: #69480]	motile	no	94.484	no
[Ref.: #69480]	flagellated	no	98.918	no
[Ref.: #69480]	gram-positive	yes	89.258	no
[Ref.: #69480]	anaerobic	no	98.267	no
[Ref.: #69480]	aerobic	yes	85.627	no
[Ref.: #69480]	halophile	no	90.061	no
[Ref.: #69480]	spore-forming	no	82.467	no
[Ref.: #69480]	glucose-util	yes	66.615	no
[Ref.: #69480]	thermophile	no	98.223	no
[Ref.: #69480]	glucose-ferment	no	92.444	no

Availability in culture collections External links

[Ref.: #67027]

Culture collection no.

DSM 109965, ITM 501047, ITM 2019-02457

[Ref.: #112398]

SI-ID 405761

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium helveticum sp. nov., a novel slowly growing mycobacterial species associated with granulomatous lesions in adult swine.	Ghielmetti G, Rosato G, Trovato A, Friedel U, Kirchgaessner C, Perroulaz C, Pendl W, Schulthess B, Bloemberg GV, Keller PM, Stephan R, Tortoli E	Int J Syst Evol Microbiol	10.1099/ijsem.0.004615	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67027

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109965

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#112398

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405761.1 )

* These data were automatically processed and therefore are not curated

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