Strain identifier
BacDive ID: 160123
Type strain: 
Species: Mycobacterium helveticum
Strain Designation: 16-83
Strain history: <- G. Ghielmetti, Univ. Zurich, Inst. Food Safety & Hygiene; 16-83 <- U. Friedel, Univ. Zurich, Inst. Food Safety & Hygiene;
NCBI tax ID(s): 1785 (species)
General
@ref: 67027
BacDive-ID: 160123
DSM-Number: 109965
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium helveticum 16-83 is a mesophilic bacterium that was isolated from lymph node of sow.
NCBI tax id
- NCBI tax id: 1785
- Matching level: species
strain history
- @ref: 67027
- history: <- G. Ghielmetti, Univ. Zurich, Inst. Food Safety & Hygiene; 16-83 <- U. Friedel, Univ. Zurich, Inst. Food Safety & Hygiene;
doi: 10.13145/bacdive160123.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium helveticum
- full scientific name: Mycobacterium helveticum Ghielmetti et al. 2021
@ref: 67027
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium helveticum
full scientific name: Mycobacterium helveticum Ghielmetti et al. 2021
strain designation: 16-83
type strain: yes
Culture and growth conditions
culture medium
- @ref: 67027
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 67027
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 67027
- sample type: lymph node of sow
- geographic location: Canton of Lucerne
- country: Switzerland
- origin.country: CHE
- continent: Europe
Sequence information
16S sequences
- @ref: 67027
- description: Mycobacterium sp. strain 16-83 16S ribosomal RNA gene, partial sequence
- accession: MT133249
- length: 1506
- database: ena
- NCBI tax ID: 2592811
Genome sequences
- @ref: 66792
- description: Mycobacterium helveticum 16-83
- accession: GCA_007714205
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2592811
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 94.484 | no |
| flagellated | no | 98.918 | no |
| gram-positive | yes | 89.258 | no |
| anaerobic | no | 98.267 | no |
| aerobic | yes | 85.627 | no |
| halophile | no | 90.061 | no |
| spore-forming | no | 82.467 | no |
| glucose-util | yes | 66.615 | no |
| thermophile | no | 98.223 | no |
| glucose-ferment | no | 92.444 | no |
External links
@ref: 67027
culture collection no.: DSM 109965, ITM 501047, ITM 2019-02457
straininfo link
- @ref: 112398
- straininfo: 405761
literature
- topic: Phylogeny
- Pubmed-ID: 33355527
- title: Mycobacterium helveticum sp. nov., a novel slowly growing mycobacterial species associated with granulomatous lesions in adult swine.
- authors: Ghielmetti G, Rosato G, Trovato A, Friedel U, Kirchgaessner C, Perroulaz C, Pendl W, Schulthess B, Bloemberg GV, Keller PM, Stephan R, Tortoli E
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004615
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Genome, Bacterial, Lymph Nodes/*microbiology, Mycobacterium/*classification/isolation & purification, Mycobacterium Infections/microbiology/veterinary, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine/*microbiology, Switzerland
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67027 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-109965 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109965) | |
| 112398 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405761.1 |