Name: Flavobacterium album HYN0059
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159806

Type strain:

Species: Flavobacterium album

Strain Designation: HYN0059

Culture col. no.: KACC 19183, NBRC 112744

NCBI tax ID(s): 2175091 (species)

Section

Flavobacterium album HYN0059 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from freshwater.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium album**
	Full Scientific Name (LPSN)	Flavobacterium album Baek et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #66771]	Cell length	1-1.45 µm

[Ref.: #66771]	Cell width	0.4-0.5 µm

[Ref.: #66771]	Cell shape	rod-shaped

[Ref.: #66771]	Motility	no

[Ref.: #66771]	Colony color	white
[Ref.: #66771]	Colony shape	circular
[Ref.: #66771]	Cultivation medium used	R2A medium

[Ref.: #66771]	Pigment production	no
[Ref.: #66771]	Pigment name	flexirubin-type pigment

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

tryptic soy agar (TSA)

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #66771]			optimum	30 °C
[Ref.: #66771]			growth	4-40 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #66771]			optimum	7
[Ref.: #66771]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66771]		NaCl		growth	0-2	%(w/v)
[Ref.: #66771]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66771]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	carbon source
[Ref.: #66771]	adenine ChEBI	-	hydrolysis
[Ref.: #66771]	adipate ChEBI	-	carbon source
[Ref.: #66771]	alginate ChEBI	-	hydrolysis
[Ref.: #66771]	casein	-	hydrolysis
[Ref.: #66771]	chitin ChEBI	-	hydrolysis
[Ref.: #66771]	crystalline cellulose	-	hydrolysis
[Ref.: #66771]	D-glucose ChEBI	-	builds acid from
[Ref.: #66771]	D-glucose ChEBI	-	carbon source
[Ref.: #66771]	D-mannitol ChEBI	-	carbon source
[Ref.: #66771]	D-mannose ChEBI	-	carbon source
[Ref.: #66771]	decanoate ChEBI	-	carbon source
[Ref.: #66771]	dna ChEBI	-	hydrolysis
[Ref.: #66771]	esculin ChEBI	+	hydrolysis
[Ref.: #66771]	gelatin ChEBI	+	hydrolysis
[Ref.: #66771]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #66771]	L-arabinose ChEBI	-	carbon source
[Ref.: #66771]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #66771]	malate ChEBI	-	carbon source
[Ref.: #66771]	maltose ChEBI	-	carbon source
[Ref.: #66771]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #66771]	phenylacetate ChEBI	-	carbon source
[Ref.: #66771]	potassium gluconate ChEBI	-	carbon source
[Ref.: #66771]	sodium citrate ChEBI	-	carbon source
[Ref.: #66771]	starch ChEBI	-	hydrolysis
[Ref.: #66771]	tryptophan ChEBI	-	assimilation
[Ref.: #66771]	tween 20 ChEBI	-	hydrolysis
[Ref.: #66771]	tween 40 ChEBI	-	hydrolysis
[Ref.: #66771]	tween 60 ChEBI	-	hydrolysis
[Ref.: #66771]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66771]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66771]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66771]	acid phosphatase	+	3.1.3.2
[Ref.: #66771]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66771]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66771]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66771]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66771]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66771]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66771]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66771]	beta-galactosidase	-	3.2.1.23
[Ref.: #66771]	beta-glucosidase	-	3.2.1.21
[Ref.: #66771]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66771]	catalase	-	1.11.1.6
[Ref.: #66771]	cystine arylamidase	-	3.4.11.3
[Ref.: #66771]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66771]	esterase (C 4)	-
[Ref.: #66771]	esterase Lipase (C 8)	-
[Ref.: #66771]	leucine arylamidase	+	3.4.11.1
[Ref.: #66771]	lipase (C 14)	-
[Ref.: #66771]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66771]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #66771]	nitrate reductase	+	1.7.99.4
[Ref.: #66771]	trypsin	-	3.4.21.4
[Ref.: #66771]	urease	-	3.5.1.5
[Ref.: #66771]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66771]

Fatty acid	Percentage
C15:0 iso	33.3
C15:0 anteiso	15.2
C17:0 iso 3OH	12.6
C15:0 iso 3OH	5.1
C15:1 iso G	4.9
C16:0 iso 3OH	4.5
C17:0 2OH	3.1
C16:0	2.5
C16:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66771]	Sample type/isolated from	freshwater
[Ref.: #66771]	Geographic location (country and/or sea, region)	Hapcheonho Lake
[Ref.: #66771]	Country	Republic of Korea
[Ref.: #66771]	Country ISO 3 Code	KOR
[Ref.: #66771]	Continent	Asia
[Ref.: #66771]	Geographic location	35.5278°/128.0220°
[Ref.: #66771]	Enrichment culture	R2A
[Ref.: #66771]	Enrichment culture temperature	25 ̊C
[Ref.: #66771]	Isolation/enrichment procedure	A standard plating technique on R2A agar (BD) was used for isolation.
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

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Global distribution of 16S sequence KY077157 (>99% sequence identity) for Flavobacterium album subclade from Microbeatlas

Aquatic Samples	512
Soil Samples	505
Animal Samples	481
Plant Samples	105
Total Samples	1603

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66771]	Flavobacterium hauense strain HYN0059 16S ribosomal RNA gene, partial sequence	KY077157	1450	ENA	1204512 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium album HYN0059	GCA_003096035	complete	GenBank	2175091 tax ID	*
[Ref.: #66792]	Flavobacterium album HYN0059	2848964341	complete	JGI IMG/M	2175091 tax ID	*

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GC-content

44.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium album HYN0059 NCBI: GCA_003096035.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium album HYN0059 NCBI: GCA_003096035.1
[Ref.: #69480]	flagellated	no	96.42	yes
[Ref.: #69480]	gram-positive	no	98.858	no
[Ref.: #69480]	anaerobic	no	99.341	yes
[Ref.: #69480]	halophile	no	94.246	yes
[Ref.: #69480]	spore-forming	no	96.139	no
[Ref.: #69480]	glucose-util	yes	80.599	yes
[Ref.: #69480]	aerobic	yes	89.811	yes
[Ref.: #69480]	thermophile	no	98.829	yes
[Ref.: #69480]	motile	no	92.544	no
[Ref.: #69480]	glucose-ferment	no	91.153	no

Availability in culture collections External links

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Culture collection no.

KACC 19183, NBRC 112744

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium magnum sp. nov., Flavobacterium pallidum sp. nov., Flavobacterium crocinum sp. nov. and Flavobacterium album sp. nov.	Baek C, Shin SK, Yi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003067	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66771

Chaeyun Baek, Su-Kyoung Shin and Hana Yi: Flavobacterium magnum sp. nov., Flavobacterium pallidum sp. nov., Flavobacterium crocinum sp. nov. and Flavobacterium album sp. nov. IJSEM 68: 3837 - 3843 2018 ( DOI 10.1099/ijsem.0.003067 , PubMed 30320543 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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