Name: Alsobacter soli SH9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159775

Type strain:

Species: Alsobacter soli

Strain Designation: SH9

Culture col. no.: JCM 32501, CCTCC AB 2017284

Strain history: L. Sun; Shanghai Acad. of Agric. Sci., China; SH9.

NCBI tax ID(s): 2109933 (species)

Section

Alsobacter soli SH9 is an obligate aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from paddy soil sample.

colony-forming
Gram-negative
motile
rod-shaped
chemoorganotroph
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Alsobacteraceae*
	Genus	*Alsobacter*
	Species	**Alsobacter soli**
	Full Scientific Name (LPSN)	Alsobacter soli Sun et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66785]	Gram stain	negative

[Ref.: #66785]	Cell length	1.2-1.8 µm

[Ref.: #66785]	Cell width	0.8-1 µm

[Ref.: #66785]	Cell shape	rod-shaped

[Ref.: #66785]	Motility	yes

[Ref.: #66785]	Flagellum arrangement	monotrichous, polar

[Ref.: #66785]	Colony size	1 mm
[Ref.: #66785]	Colony color	cream-white
[Ref.: #66785]	Colony shape	circular
[Ref.: #66785]	Incubation period	7 days
[Ref.: #66785]	Cultivation medium used	R2A medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66785]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #66785]

Culture medium growth

		Temperature
[Ref.: #66785]	growth	15-40 °C
[Ref.: #66785]	optimum	30-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #66785]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66785]			optimum	7
[Ref.: #66785]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66785]

Oxygen tolerance

obligate aerobe

[Ref.: #66785]

Nutrition type

chemoorganotroph

[Ref.: #66785]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66785]		NaCl		growth	0-5	%
[Ref.: #66785]		NaCl		optimum	1	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66785]	adipate ChEBI	-	assimilation
[Ref.: #66785]	D-glucose ChEBI	+	assimilation
[Ref.: #66785]	D-glucose ChEBI	-	builds acid from
[Ref.: #66785]	D-mannitol ChEBI	-	assimilation
[Ref.: #66785]	D-mannose ChEBI	+	assimilation
[Ref.: #66785]	decanoate ChEBI	-	assimilation
[Ref.: #66785]	L-arabinose ChEBI	+	assimilation
[Ref.: #66785]	malate ChEBI	-	assimilation
[Ref.: #66785]	maltose ChEBI	-	assimilation
[Ref.: #66785]	nitrate ChEBI	-	reduction
[Ref.: #66785]	phenylacetate ChEBI	-	assimilation
[Ref.: #66785]	potassium gluconate ChEBI	-	assimilation
[Ref.: #66785]	sodium citrate ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #66785]	acid phosphatase	+	3.1.3.2
[Ref.: #66785]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66785]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #66785]	alpha-fucosidase	-	3.2.1.51
[Ref.: #66785]	alpha-galactosidase	-	3.2.1.22
[Ref.: #66785]	alpha-glucosidase	-	3.2.1.20
[Ref.: #66785]	alpha-mannosidase	-	3.2.1.24
[Ref.: #66785]	arginine dihydrolase	-	3.5.3.6
[Ref.: #66785]	beta-galactosidase	-	3.2.1.23
[Ref.: #66785]	beta-glucosidase	-	3.2.1.21
[Ref.: #66785]	beta-glucuronidase	-	3.2.1.31
[Ref.: #66785]	catalase	+	1.11.1.6
[Ref.: #66785]	cystine arylamidase	+	3.4.11.3
[Ref.: #66785]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66785]	esterase (C 4)	+
[Ref.: #66785]	esterase Lipase (C 8)	+
[Ref.: #66785]	leucine arylamidase	+	3.4.11.1
[Ref.: #66785]	lipase (C 14)	+
[Ref.: #66785]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #66785]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66785]	urease	+	3.5.1.5
[Ref.: #66785]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #66785]

Fatty acid	Percentage
C18:1 w7c and/or C18:1 w6c	41.3
C16:1 w6c and/or C16:1 w7c	29.5
C16:0	14.8
C12:0 aldehyde and/or equivalent chain length 10.9	5.6
C12:0	2.5
C16:1 w5c	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66785]	Sample type/isolated from	paddy soil sample
[Ref.: #66785]	Geographic location (country and/or sea, region)	crop-animal mixed farming area, Shanghai
[Ref.: #66785]	Country	China
[Ref.: #66785]	Country ISO 3 Code	CHN
[Ref.: #66785]	Continent	Asia
[Ref.: #66785]	Geographic location	30.8833°/121.3670°

[Ref.: #67770]	Sample type/isolated from	Paddy soil sample collected in Shanghai
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Paddy (Ricefield)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MG654667 (>99% sequence identity) for Alsobacter soli from Microbeatlas

Aquatic Samples	9
Soil Samples	100
Animal Samples	30
Plant Samples	18
Total Samples	157

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66785]	Alsobacter sp. strain SH9 16S ribosomal RNA gene, partial sequence	MG654667	1408	ENA	2109933 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alsobacter soli SH9	GCA_003004785	contig	GenBank	2109933 tax ID
[Ref.: #66792]	Alsobacter soli SH9	2786546835	draft	JGI IMG/M	2109933 tax ID	*

[Ref.: #67770]

GC-content

68.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #66785]

Culture collection no.

JCM 32501, CCTCC AB 2017284

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alsobacter soli sp. nov., a novel bacterium isolated from paddy soil, emended description of the genus Alsobacter and description of the family Alsobacteraceae fam. nov.	Sun L, Liu H, Chen W, Huang K, Lyu W, Gao X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003088	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66785

Lina Sun, Hongming Liu, Wei Chen, Kaihua Huang, Weiguang Lyu, Xinhua Gao: Alsobacter soli sp. nov., a novel bacterium isolated from paddy soil, emended description of the genus Alsobacter and description of the family Alsobacteraceae fam. nov.. IJSEM 68: 3902 - 3907 2018 ( DOI 10.1099/ijsem.0.003088 , PubMed 30362938 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Alsobacter soli in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF