Name: Micromonospora deserti 13K206
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159690

Type strain:

Species: Micromonospora deserti

Strain Designation: 13K206

Culture col. no.: DSM 107532, JCM 32583

Strain history: N. Sahin; Ondokuz Mayis Univ., Turkey; 13K206.

NCBI tax ID(s): 2070366 (species)

SI-ID 398478

DSM 107532

Section

Micromonospora deserti 13K206 is an aerobe, spore-forming, mesophilic bacterium that builds substrate hyphae and was isolated from desert soil.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Micromonospora*
	Species	**Micromonospora deserti**
	Full Scientific Name (LPSN)	Micromonospora deserti Saygin et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69668]	Gram stain	positive

[Ref.: #69243]	Colony color	Beige (1001)
[Ref.: #69243]	Cultivation medium used	ISP 7

[Ref.: #69243]	Colony color	Ivory (1014), dahlia yellow (1033)
[Ref.: #69243]	Cultivation medium used	ISP 5

[Ref.: #69243]	Colony color	Olive brown (8008), ochre brown (8001)
[Ref.: #69243]	Cultivation medium used	suter with tyrosine

[Ref.: #69243]	Colony color	Olive brown (8008), ochre brown (8001)
[Ref.: #69243]	Cultivation medium used	suter without tyrosine

[Ref.: #69243]	Colony color	Pastel orange (2003)
[Ref.: #69243]	Cultivation medium used	ISP 3

[Ref.: #69243]	Colony color	Pastel yellow (1034)
[Ref.: #69243]	Cultivation medium used	ISP 2

[Ref.: #69243]	Colony color	Sand yellow (1002)
[Ref.: #69243]	Cultivation medium used	ISP 6

[Ref.: #69243]	Colony color	Sand yellow (1002), pastel yellow (1034)
[Ref.: #69243]	Cultivation medium used	ISP 4

[Ref.: #69668]	Colony color	yellow, light orange

[Ref.: #69243]	Pigment production	no
[Ref.: #69243]	Pigment name	Melanin
[Ref.: #69243]	Pigment production	yes
[Ref.: #69243]	Pigmentation color	Lemon orange (1012)
[Ref.: #69243]	Pigment name	soluble pigment
[Ref.: #69668]	Pigment production	no
[Ref.: #69668]	Pigment name	diffusible pigment

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 2

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 3

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 4

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 5

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 6

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	ISP 7

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69243]	Multicellular complex forming ability	no
[Ref.: #69243]	Multicellular complex name	Aerial mycelium
[Ref.: #69243]	Medium Name (multicellularity)	suter without tyrosine

[Ref.: #69668]	Multicellular complex forming ability	yes
[Ref.: #69668]	Multicellular complex name	substrate hyphae
[Ref.: #69668]	Multicellular complex further description	branched

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66541]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #66541]

Culture medium growth

[Ref.: #66541]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66541]

Culture medium composition

expand / minimize

[Ref.: #66541]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #66541]

Culture medium growth

[Ref.: #66541]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66541]

Culture medium composition

expand / minimize

[Ref.: #69668]

Culture medium

Minimal medium

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 2

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 3

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 4

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 7

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

modified Bennett's agar

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

Czapek's agar

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 5

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

ISP 6

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #69668]

Culture medium growth

[Ref.: #69668]

Culture medium

Nutrient agar (NA)

[Ref.: #69668]

Culture medium growth

		Temperature
[Ref.: #66541]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #69668]	growth	20-37 °C
[Ref.: #69668]	optimum	28 °C

[Ref.: #66541]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #69668]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #69668]			optimum	7
[Ref.: #69668]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69668]

Oxygen tolerance

aerobe

[Ref.: #69668]	Spore description	Rugose single spore
[Ref.: #69668]	Type of spore	spore
[Ref.: #69668]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69243]		NaCl		growth	0-5	%
[Ref.: #69668]		NaCl		growth	0-3	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₆), MK-9(H₂)
[Ref.: #69668]	Observation	Inhibits growth of E.coli ATCC 25922T

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69668]	allantoin ChEBI	+	hydrolysis
[Ref.: #69243]	arabinose ChEBI	+	growth
[Ref.: #69668]	arbutin ChEBI	+	hydrolysis
[Ref.: #69668]	cellobiose ChEBI	+	carbon source
[Ref.: #69243]	cellulose ChEBI	+/-	growth
[Ref.: #69668]	D-arabinose ChEBI	-	carbon source
[Ref.: #69668]	D-arabinose ChEBI	-	energy source
[Ref.: #69668]	D-fructose ChEBI	+	carbon source
[Ref.: #69668]	D-galactose ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	D-mannose ChEBI	+	carbon source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	D-sorbitol ChEBI	-	carbon source
[Ref.: #69668]	D-sorbitol ChEBI	-	energy source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	dextran ChEBI	+	carbon source
[Ref.: #69668]	dextrin ChEBI	+	carbon source
[Ref.: #69668]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69243]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69243]	glucose ChEBI	+	growth
[Ref.: #69668]	glycine ChEBI	+	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	guanine ChEBI	+	hydrolysis
[Ref.: #69668]	hydroxyproline ChEBI	-	nitrogen source
[Ref.: #69668]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #69243]	inositol ChEBI	+/-	growth
[Ref.: #69668]	isoleucine ChEBI	+	nitrogen source
[Ref.: #69668]	L-alanine ChEBI	+	nitrogen source
[Ref.: #69668]	L-arabinose ChEBI	+	carbon source
[Ref.: #69668]	L-arginine ChEBI	+	nitrogen source
[Ref.: #69668]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #69668]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #69668]	L-glutamine ChEBI	-	carbon source
[Ref.: #69668]	L-glutamine ChEBI	-	energy source
[Ref.: #69668]	L-histidine ChEBI	-	nitrogen source
[Ref.: #69668]	L-methionine ChEBI	+	nitrogen source
[Ref.: #69668]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #69668]	L-proline ChEBI	+	nitrogen source
[Ref.: #69668]	L-rhamnose ChEBI	+	carbon source
[Ref.: #69668]	L-serine ChEBI	+	nitrogen source
[Ref.: #69668]	L-sorbose ChEBI	-	carbon source
[Ref.: #69668]	L-sorbose ChEBI	-	energy source
[Ref.: #69668]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #69668]	L-valine ChEBI	+	nitrogen source
[Ref.: #69668]	lactose ChEBI	-	carbon source
[Ref.: #69668]	lactose ChEBI	-	energy source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	mannitol ChEBI	-	carbon source
[Ref.: #69668]	mannitol ChEBI	-	energy source
[Ref.: #69243]	mannose ChEBI	+/-	growth
[Ref.: #69668]	melezitose ChEBI	+	carbon source
[Ref.: #69668]	melibiose ChEBI	+	carbon source
[Ref.: #69668]	myo-inositol ChEBI	-	carbon source
[Ref.: #69668]	myo-inositol ChEBI	-	energy source
[Ref.: #69668]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69243]	raffinose ChEBI	+	growth
[Ref.: #69668]	raffinose ChEBI	+	carbon source
[Ref.: #69243]	rhamnose ChEBI	+	growth
[Ref.: #69668]	ribitol ChEBI	-	carbon source
[Ref.: #69668]	ribitol ChEBI	-	energy source
[Ref.: #69668]	starch ChEBI	+	hydrolysis
[Ref.: #69668]	succinate ChEBI	-	carbon source
[Ref.: #69668]	succinate ChEBI	-	energy source
[Ref.: #69243]	sucrose ChEBI	+	growth
[Ref.: #69668]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69668]	tween 40 ChEBI	+	hydrolysis
[Ref.: #69668]	tween 80 ChEBI	+	hydrolysis
[Ref.: #69668]	urea ChEBI	-	hydrolysis
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69668]	xanthine ChEBI	+	hydrolysis
[Ref.: #69668]	xylan ChEBI	+	hydrolysis
[Ref.: #69668]	xylitol ChEBI	-	carbon source
[Ref.: #69668]	xylitol ChEBI	-	energy source
[Ref.: #69243]	xylose ChEBI	+	growth
[Ref.: #69668]	xylose ChEBI	-	carbon source
[Ref.: #69668]	xylose ChEBI	-	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #69668]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #69668]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #69668]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #69668]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #69668]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #69668]	beta-galactosidase	+	3.2.1.23
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #69668]	leucine arylamidase	+	3.4.11.1
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #69668]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #69668]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #69668]

Fatty acid	Percentage
iso-C16:0	52.7
iso-C15:0	7.7
C17:0 10-methyl	4.9
iso-C17:0	4.1
C16:0 9-methyl	4.1
C18:0	4.1
anteiso-C17:0	3.7
C18:0 10-methyl	3.7
iso-C18:0	3.4
C18:1 w9c	2.7
iso-C16:1 G	2.3
C16:1 2OH	1.3
C16:0	1.2

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69243]	3737	-	-	-	+	-	+	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69243]	5921	not determinedn.d.	+	+	+	+/-	+	+/-	+/-	+	+	+	+	+/-	+	-	+	+/-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66541]	Sample type/isolated from	desert soil
[Ref.: #66541]	Geographic location (country and/or sea, region)	Mary (38° 57' 18'' N, 61° 29' 10'' E)
[Ref.: #66541]	Country	Turkmenistan
[Ref.: #66541]	Country ISO 3 Code	TKM
[Ref.: #66541]	Continent	Asia
[Ref.: #66541]	Geographic location	38.9550°/61.4861°

[Ref.: #67770]	Sample type/isolated from	Desert soil from the Karakum Desert
[Ref.: #67770]	Country	Turkmenistan
[Ref.: #67770]	Country ISO 3 Code	TKM
[Ref.: #67770]	Continent	Asia

[Ref.: #69668]	Sample type/isolated from	Desert soil
[Ref.: #69668]	Geographic location (country and/or sea, region)	Karakum Desert, Mary
[Ref.: #69668]	Country	Turkmenistan
[Ref.: #69668]	Country ISO 3 Code	TKM
[Ref.: #69668]	Continent	Asia
[Ref.: #69668]	Geographic location	38.9553°/61.4862°
[Ref.: #69668]	Enrichment culture	minimal medium
[Ref.: #69668]	Enrichment culture duration	28 days
[Ref.: #69668]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Xerophilic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66541]	Micromonospora deserti strain 13K206 16S ribosomal RNA gene, partial sequence	MG770841	1480	ENA	2070366 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Micromonospora deserti 13K206	GCA_003236335	contig	GenBank	2070366 tax ID
[Ref.: #69668]	Whole genome shotgun	POUB00000000		GenBank	2070366 tax ID
[Ref.: #66792]	Micromonospora deserti 13K206	2866095137	draft	JGI IMG/M	2070366 tax ID	*

[Ref.: #66541]	GC-content	72.4 mol%	sequence analysis
[Ref.: #67770]	GC-content	72.4 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #66541]

Culture collection no.

DSM 107532, JCM 32583

[Ref.: #112160]

SI-ID 398478

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora deserti sp. nov., isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Int J Syst Evol Microbiol	10.1099/ijsem.0.003752	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66541

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107532

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69243

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69668

Hayrettin Saygin, Hilal Ay, Kiymet Guven, Demet Cetin, Nevzat Sahin: Micromonospora deserti sp. nov., isolated from the Karakum Desert. IJSEM 70: 282 - 291 2020 ( DOI 10.1099/ijsem.0.003752 )

#112160

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398478.1 )

* These data were automatically processed and therefore are not curated

Change proposal

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