Name: Streptomyces reniochalinae LHW50302
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159663

Type strain:

Species: Streptomyces reniochalinae

Strain Designation: LHW50302

Culture col. no.: DSM 106194, CCTCC AA 2018013

Strain history: <- L. Li, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai, P.R. China; LHW50302

NCBI tax ID(s): 2250578 (species)

SI-ID 403358

DSM 106194

Section

Streptomyces reniochalinae LHW50302 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from marine sponge.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces reniochalinae**
	Full Scientific Name (LPSN)	Streptomyces reniochalinae Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %92.391

[Ref.: #69305]	Colony color	Green brown (8000), sepia brown (8014)
[Ref.: #69305]	Cultivation medium used	ISP 7

[Ref.: #69305]	Colony color	Beige (1001), grey beige (1019)
[Ref.: #69305]	Cultivation medium used	suter with tyrosine

[Ref.: #69305]	Colony color	Beige (1001)
[Ref.: #69305]	Cultivation medium used	suter without tyrosine

[Ref.: #69305]	Colony color	Ochre brown (8001), sepia brown (8014)
[Ref.: #69305]	Cultivation medium used	ISP 3

[Ref.: #69305]	Colony color	Pale brown (8025), brown beige (1011)
[Ref.: #69305]	Cultivation medium used	ISP 4

[Ref.: #69305]	Colony color	Sand yellow (1002), grey brown (8019)
[Ref.: #69305]	Cultivation medium used	ISP 6

[Ref.: #69305]	Colony color	Sepia brown (8014), beige (1001)
[Ref.: #69305]	Cultivation medium used	ISP 5

[Ref.: #69305]	Colony color	Terra brown (8028), green brown (8000)
[Ref.: #69305]	Cultivation medium used	ISP 2

[Ref.: #69305]	Pigment production	no
[Ref.: #69305]	Pigment name	Melanin
[Ref.: #69305]	Pigment production	yes
[Ref.: #69305]	Pigmentation color	Pale brown (8025), signal brown (8002), ochre brown (8001)
[Ref.: #69305]	Pigment name	soluble pigment

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 2

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Cream (9001)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 3

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Traffic white (9016), light grey (7035)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 4

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Pure white (9010)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 5

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Pure white (9010)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 6

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002), stone grey (7030)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 7

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002)
[Ref.: #69305]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Cream (9001)
[Ref.: #69305]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #66513]

Caption:

Medium 65 28°C

[Ref.: #66513]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66513]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #66513]

Culture medium growth

[Ref.: #66513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66513]

Culture medium composition

expand / minimize

[Ref.: #66513]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #66513]

Culture medium growth

[Ref.: #66513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66513]

Culture medium composition

expand / minimize

[Ref.: #66513]

Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

[Ref.: #66513]

Culture medium growth

[Ref.: #66513]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66513]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66513]			growth	28 °C

[Ref.: #66513]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69305]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69305]	arabinose ChEBI	+	growth
[Ref.: #69305]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69305]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69305]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69305]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69305]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69305]	raffinose ChEBI	+	growth
[Ref.: #69305]	rhamnose ChEBI	+/-	growth
[Ref.: #69305]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69305]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69305]	3798	-	-	-	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69305]	5982	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+/-	+/-	+/-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66513]	Sample type/isolated from	marine sponge
[Ref.: #66513]	Geographic location (country and/or sea, region)	Xisha Islands, Hainan Province (16° 45' N, 112° 21' E)
[Ref.: #66513]	Country	China
[Ref.: #66513]	Country ISO 3 Code	CHN
[Ref.: #66513]	Continent	Asia
[Ref.: #66513]	Geographic location	16.7500°/112.3500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66513]	Streptomyces sp. strain LHW50302 16S ribosomal RNA gene, partial sequence	KX347891	1488	ENA	1931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces reniochalinae LHW50302	GCA_003323735	scaffold	GenBank	2250578 tax ID	*
[Ref.: #66792]	Streptomyces sp. LHW50302	2250578.3	wgs	PATRIC	2250578 tax ID	*
[Ref.: #66792]	Streptomyces reniochalinae LHW50302	2862589901	draft	JGI IMG/M	2250578 tax ID	*

[Ref.: #66513]

GC-content

71.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces reniochalinae LHW50302 NCBI: GCA_003323735.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces reniochalinae LHW50302 NCBI: GCA_003323735.1
[Ref.: #69480]	motile	no	94.782	no
[Ref.: #69480]	flagellated	no	98.155	no
[Ref.: #69480]	gram-positive	yes	90.226	no
[Ref.: #69480]	anaerobic	no	98.743	no
[Ref.: #69480]	aerobic	yes	90.867	no
[Ref.: #69480]	halophile	no	84.848	no
[Ref.: #69480]	spore-forming	yes	94.07	no
[Ref.: #69480]	glucose-util	yes	90.01	no
[Ref.: #69480]	thermophile	no	89.898	yes
[Ref.: #69480]	glucose-ferment	no	87.744	yes

Availability in culture collections External links

[Ref.: #66513]

Culture collection no.

DSM 106194, CCTCC AA 2018013

[Ref.: #112137]

SI-ID 403358

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.	Li L, Wang J, Zhou YJ, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003109	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66513

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106194

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69305

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403358.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces reniochalinae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF