Name: Streptomyces reniochalinae LHW50302
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 159663

Type strain:

Species: Streptomyces reniochalinae

Strain Designation: LHW50302

Culture col. no.: DSM 106194, CCTCC AA 2018013

Strain history: <- L. Li, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai, P.R. China; LHW50302

NCBI tax ID(s): 2250578 (species)

SI-ID 403358

DSM 106194

Special Collections

Section

Streptomyces reniochalinae LHW50302 is a spore-forming bacterium that builds an aerial mycelium and was isolated from marine sponge.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces reniochalinae**
	Full Scientific Name (LPSN)	Streptomyces reniochalinae Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %91.919

[Ref.: #69305]	Colony color	Green brown (8000), sepia brown (8014)
[Ref.: #69305]	Cultivation medium used	ISP 7

[Ref.: #69305]	Colony color	Beige (1001), grey beige (1019)
[Ref.: #69305]	Cultivation medium used	suter with tyrosine

[Ref.: #69305]	Colony color	Beige (1001)
[Ref.: #69305]	Cultivation medium used	suter without tyrosine

[Ref.: #69305]	Colony color	Ochre brown (8001), sepia brown (8014)
[Ref.: #69305]	Cultivation medium used	ISP 3

[Ref.: #69305]	Colony color	Pale brown (8025), brown beige (1011)
[Ref.: #69305]	Cultivation medium used	ISP 4

[Ref.: #69305]	Colony color	Sand yellow (1002), grey brown (8019)
[Ref.: #69305]	Cultivation medium used	ISP 6

[Ref.: #69305]	Colony color	Sepia brown (8014), beige (1001)
[Ref.: #69305]	Cultivation medium used	ISP 5

[Ref.: #69305]	Colony color	Terra brown (8028), green brown (8000)
[Ref.: #69305]	Cultivation medium used	ISP 2

[Ref.: #69305]	Pigment production	no
[Ref.: #69305]	Pigment name	Melanin
[Ref.: #69305]	Pigment production	yes
[Ref.: #69305]	Pigmentation color	Pale brown (8025), signal brown (8002), ochre brown (8001)
[Ref.: #69305]	Pigment name	soluble pigment

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 2

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Cream (9001)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 3

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Traffic white (9016), light grey (7035)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 4

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Pure white (9010)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 5

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Pure white (9010)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 6

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002), stone grey (7030)
[Ref.: #69305]	Medium Name (multicellularity)	ISP 7

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Grey white (9002)
[Ref.: #69305]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69305]	Multicellular complex forming ability	yes
[Ref.: #69305]	Multicellular complex name	Aerial mycelium
[Ref.: #69305]	Multicellular complex color	Cream (9001)
[Ref.: #69305]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66513]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.77
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69305]		NaCl		growth	0-10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69305]	arabinose ChEBI	+	growth
[Ref.: #69305]	cellulose ChEBI	+/-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69305]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69305]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69305]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69305]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69305]	raffinose ChEBI	+	growth
[Ref.: #69305]	rhamnose ChEBI	+/-	growth
[Ref.: #69305]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69305]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69305]	3798	-	-	-	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69305]	5982	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+/-	+/-	+/-	+	+	-	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66513]	Sample type/isolated from	marine sponge
[Ref.: #66513]	Geographic location (country and/or sea, region)	Xisha Islands, Hainan Province (16° 45' N, 112° 21' E)
[Ref.: #66513]	Country	China
[Ref.: #66513]	Country ISO 3 Code	CHN
[Ref.: #66513]	Continent	Asia
[Ref.: #66513]	Geographic location	16.7500°/112.3500°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66513]	Streptomyces reniochalinae 16S ribosomal RNA gene, partial sequence	KX347891	1488	GenBank ENA	1931 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces reniochalinae LHW50302	GCA_003323735	scaffold	GenBank ENA	2250578 tax ID	*
[Ref.: #66792]	Streptomyces sp. LHW50302	2250578.3	wgs	PATRIC	2250578 tax ID	*
[Ref.: #66792]	Streptomyces reniochalinae LHW50302	2862589901	draft	JGI IMG/M	2250578 tax ID	*

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GC-content

71.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces reniochalinae LHW50302 NCBI: GCA_003323735.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces reniochalinae LHW50302 NCBI: GCA_003323735.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.919	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.446	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.835	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.77	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.944	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	no

Availability in culture collections External links

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Culture collection no.

DSM 106194, CCTCC AA 2018013

[Ref.: #112137]

SI-ID 403358

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.	Li L, Wang J, Zhou YJ, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003109	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66513

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106194

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69305

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112137

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403358.1 )

* These data were automatically processed and therefore are not curated

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