Name: Dactylosporangium sucinum RY35-23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159617

Type strain:

Species: Dactylosporangium sucinum

Strain Designation: RY35-23

Culture col. no.: DSM 111298, JCM 19831, PCU 333, TISTR 2212

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; RY35-23.

NCBI tax ID(s): 1424081 (species)

Section

Dactylosporangium sucinum RY35-23 is a mesophilic bacterium that was isolated from Peat swamp forest soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Dactylosporangium*
	Species	**Dactylosporangium sucinum**
	Full Scientific Name (LPSN)	Dactylosporangium sucinum Phongsopitanun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

positive Confidence in %100

Multimedia content

[Ref.: #66443]

Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #66443]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66443]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #66443]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66443]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #66443]	Geographic location (country and/or sea, region)	Nong Jum Rung area, Rayong Province, Thailand
[Ref.: #66443]	Country	Thailand
[Ref.: #66443]	Country ISO 3 Code	THA
[Ref.: #66443]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil from Nong Jum Rung area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Acidic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66443]	Dactylosporangium sucinum gene for 16S ribosomal RNA, partial sequence	AB872783	1422	ENA	1424081 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dactylosporangium sucinum JCM 19831	GCA_014647515	scaffold	GenBank	1424081 tax ID	*
[Ref.: #66792]	Dactylosporangium sucinum strain JCM 19831	1424081.3	wgs	PATRIC	1424081 tax ID	*

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GC-content

72.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dactylosporangium sucinum JCM 19831 NCBI: GCA_014647515.1
[Ref.: #69480]	anaerobic	no	98.752	no
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	spore-forming	yes	100	yes
[Ref.: #69480]	thermophile	no	99.709	no
[Ref.: #69480]	motile	no	61.619	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dactylosporangium sucinum JCM 19831 NCBI: GCA_014647515.1
[Ref.: #69481]	spore-forming	yes	99	no

Availability in culture collections External links

[Ref.: #66443]

Culture collection no.

DSM 111298, JCM 19831, PCU 333, TISTR 2212

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).	Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0697-2	2016	*
Phylogeny	Dactylosporangium sucinum sp. nov., isolated from Thai peat swamp forest soil.	Phongsopitanun W, Kudo T, Ohkuma M, Suwanborirux K, Tanasupawat S	J Antibiot (Tokyo)	10.1038/ja.2014.170	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111298

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Dactylosporangium sucinum JCM 19831

Dactylosporangium sucinum JCM 19831

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