Name: Dactylosporangium sucinum RY35-23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159617

Type strain:

Species: Dactylosporangium sucinum

Strain Designation: RY35-23

Culture col. no.: DSM 111298, JCM 19831, PCU 333, TISTR 2212

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; RY35-23.

NCBI tax ID(s): 1424081 (species)

SI-ID 405074

DSM 111298

Section

Dactylosporangium sucinum RY35-23 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Peat swamp forest soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Dactylosporangium*
	Species	**Dactylosporangium sucinum**
	Full Scientific Name (LPSN)	Dactylosporangium sucinum Phongsopitanun et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

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Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66443]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #66443]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66443]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #66443]	Geographic location (country and/or sea, region)	Nong Jum Rung area, Rayong Province, Thailand
[Ref.: #66443]	Country	Thailand
[Ref.: #66443]	Country ISO 3 Code	THA
[Ref.: #66443]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil from Nong Jum Rung area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Acidic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66443]	Dactylosporangium sucinum gene for 16S ribosomal RNA, partial sequence	AB872783	1422	ENA	1424081 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dactylosporangium sucinum JCM 19831	GCA_014647515	scaffold	GenBank	1424081 tax ID	*
[Ref.: #66792]	Dactylosporangium sucinum strain JCM 19831	1424081.3	wgs	PATRIC	1424081 tax ID	*

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GC-content

72.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Dactylosporangium sucinum JCM 19831 NCBI: GCA_014647515.1
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Dactylosporangium sucinum JCM 19831 NCBI: GCA_014647515.1
[Ref.: #69480]	flagellated	no	90.172	no
[Ref.: #69480]	gram-positive	yes	84.642	no
[Ref.: #69480]	anaerobic	no	99.05	no
[Ref.: #69480]	aerobic	yes	89.979	no
[Ref.: #69480]	halophile	no	96.16	no
[Ref.: #69480]	spore-forming	yes	93.208	no
[Ref.: #69480]	glucose-util	yes	89.277	no
[Ref.: #69480]	thermophile	no	98.284	yes
[Ref.: #69480]	motile	yes	62.992	no
[Ref.: #69480]	glucose-ferment	no	86.897	no

Availability in culture collections External links

[Ref.: #66443]

Culture collection no.

DSM 111298, JCM 19831, PCU 333, TISTR 2212

[Ref.: #112091]

SI-ID 405074

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).	Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-016-0697-2	2016	*
Phylogeny	Dactylosporangium sucinum sp. nov., isolated from Thai peat swamp forest soil.	Phongsopitanun W, Kudo T, Ohkuma M, Suwanborirux K, Tanasupawat S	J Antibiot (Tokyo)	10.1038/ja.2014.170	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111298

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112091

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405074.1 )

* These data were automatically processed and therefore are not curated

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Dactylosporangium sucinum JCM 19831

Dactylosporangium sucinum JCM 19831

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