Name: Arcobacter cloacae SW28-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159585

Type strain:

Species: Arcobacter cloacae

Strain Designation: SW28-13

Culture col. no.: DSM 111015, CECT 7834, LMG 26153, CIP 110784

Strain history: CIP <- 2016, CECT <- 2010, J. Figueras Salvat, Rovira i Virgili Univ., Reus, Spain strain: SW28-13

NCBI tax ID(s): 1054034 (species)

SI-ID 371534

LMG 26153, CECT 7834, CIP 110784

Section

Arcobacter cloacae SW28-13 is a mesophilic, motile bacterium that was isolated from sewage of waste water treatment plant.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Arcobacteraceae*
	Genus	*Arcobacter*
	Species	**Arcobacter cloacae**
	Full Scientific Name (LPSN)	Arcobacter cloacae Levican et al. 2013

	Synonym	Pseudoarcobacter cloacae
	Synonym	Pseudarcobacter cloacae

Information on morphological and physiological properties Morphology

[Ref.: #118310]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #118310]	Cell shape	rod-shaped

[Ref.: #118310]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %95.996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66411]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #66411]

Culture medium composition

expand / minimize

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Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #66411]

Culture medium growth

[Ref.: #66411]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66411]

Culture medium composition

expand / minimize

[Ref.: #118310]

Culture medium

CIP Medium 6

[Ref.: #118310]

Culture medium growth

[Ref.: #118310]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #118310]

Culture medium

CIP Medium 45

[Ref.: #118310]

Culture medium growth

[Ref.: #118310]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #66411]			growth	30 °C
[Ref.: #66411]			growth	28 °C

[Ref.: #66411]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.976
[Ref.: #69481]	Ability of spore formation	no Confidence in %97

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68373]	acetate ChEBI	+	assimilation	* from API CAM
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68373]	citrate ChEBI	-	assimilation	* from API CAM
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE, API CAM
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68373]	hippurate ChEBI	-	hydrolysis	* from API CAM
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE, API CAM
[Ref.: #68373]	propionate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	succinate ChEBI	+	assimilation	* from API CAM
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	-	reduction	* from API CAM
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE, API CAM
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg	* from API CAM
[Ref.: #68373]	erythromycin ChEBI	yes	14	µg	* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg	* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68373]	esterase	+		* from API CAM
[Ref.: #68373]	gamma-glutamyltransferase	-	2.3.2.2	* from API CAM
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM, API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #66411]	25229	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #66411]	3917	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66411]	Sample type/isolated from	sewage of waste water treatment plant
[Ref.: #66411]	Geographic location (country and/or sea, region)	Reus
[Ref.: #66411]	Country	Spain
[Ref.: #66411]	Country ISO 3 Code	ESP
[Ref.: #66411]	Continent	Europe
[Ref.: #66411]	Geographic location	41.1561°/1.1069°

[Ref.: #118310]	Sample type/isolated from	Environment, Sewage of a Waste Water Treatment Plant (WWTP)
[Ref.: #118310]	Geographic location (country and/or sea, region)	Reus, Spain
[Ref.: #118310]	Country	Spain
[Ref.: #118310]	Country ISO 3 Code	ESP
[Ref.: #118310]	Continent	Europe
[Ref.: #118310]	Isolation date	2009-03-01
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Sewage sludge
#Engineered	#Waste	#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_117570 (>99% sequence identity) for Arcobacter from Microbeatlas

Aquatic Samples	9375
Soil Samples	408
Animal Samples	847
Plant Samples	137
Total Samples	10767

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #66411]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118310]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66411]	Arcobacter cloacae strain SW28-13 16S ribosomal RNA, partial sequence	NR_117570	1402	GenBank	1054034 tax ID
[Ref.: #66411]	Arcobacter cloacae partial 16S rRNA gene, type strain SW28-13T	HE565360	1402	ENA	1054034 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arcobacter cloacae LMG 26153	GCA_013201935	complete	GenBank	1054034 tax ID	*
[Ref.: #66792]	Arcobacter cloacae CECT 7834	GCA_004115805	contig	GenBank	1054034 tax ID	*
[Ref.: #66792]	Arcobacter cloacae strain CECT 7834	1054034.7	wgs	PATRIC	1054034 tax ID	*
[Ref.: #66792]	Arcobacter cloacae strain LMG 26153	1054034.9	complete	PATRIC	1054034 tax ID	*
[Ref.: #66792]	Arcobacter cloacae CECT 7834	2873811608	draft	JGI IMG/M	1054034 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arcobacter cloacae LMG 26153 NCBI: GCA_013201935.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arcobacter cloacae LMG 26153 NCBI: GCA_013201935.1
[Ref.: #69480]	motile	yes	84.06	no
[Ref.: #69480]	flagellated	yes	69.563	no
[Ref.: #69480]	gram-positive	no	98.109	no
[Ref.: #69480]	anaerobic	no	75.04	no
[Ref.: #69480]	aerobic	no	89.526	no
[Ref.: #69480]	halophile	no	89.485	no
[Ref.: #69480]	spore-forming	no	93.944	no
[Ref.: #69480]	glucose-util	no	88.176	yes
[Ref.: #69480]	thermophile	no	98.833	yes
[Ref.: #69480]	glucose-ferment	no	91.844	yes

Availability in culture collections External links

[Ref.: #66411]

Culture collection no.

DSM 111015, CECT 7834, LMG 26153, CIP 110784

[Ref.: #112061]

SI-ID 371534

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage.	Levican A, Collado L, Figueras MJ	Syst Appl Microbiol	10.1016/j.syapm.2012.11.003	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66411

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111015

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68373

Automatically annotated from API CAM .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112061

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371534.1 )

#118310 Collection of Institut Pasteur ; Curators of the CIP; CIP 110784
* These data were automatically processed and therefore are not curated

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Arcobacter cloacae LMG 26153

Arcobacter cloacae LMG 26153

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