Arcobacter cloacae (DSM 111015, CECT 7834, LMG 26153)

Name: Arcobacter cloacae (DSM 111015, CECT 7834, LMG 26153)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159585

Type strain

Strain Designation SW28-13

Culture col. no. DSM 111015 CECT 7834 LMG 26153 CIP 110784 SW28-13

NCBI tax ID(s) 1054034

Special Collections DSMZ CIP

Links

Arcobacter cloacae SW28-13 is a mesophilic, Gram-negative, motile prokaryote that was isolated from sewage of waste water treatment plant.

Gram-negative motile rod-shaped mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371534

DSM 111015,LMG 26153,CECT 7834,CIP 110784

@ref 20215

Last LPSN update 2025-12-16 10:08:17

Domain Pseudomonadati

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Arcobacteraceae

Genus Arcobacter

Species Arcobacter cloacae

Full scientific name Arcobacter cloacae Levican et al. 2013

Synonyms (2)

Pseudoarcobacter cloacae
Pseudarcobacter cloacae

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
125439	negative		99
125438	negative		96.81
118310	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66411	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
66411	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
118310	CIP Medium 6	Medium recipe at CIP
118310	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66411	positive	growth	30	mesophilic
66411	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.4

Spore formation

@ref	Spore formation	Confidence
125439		91.4
125438		92.375

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68373	30089 ChEBI	acetate	+	assimilation	from API CAM
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68373	16947 ChEBI	citrate	-	assimilation	from API CAM
68373	17634 ChEBI	D-glucose	-	assimilation	from API CAM
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68373	606565 ChEBI	hippurate	-	hydrolysis	from API CAM
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68373	25115 ChEBI	malate	-	assimilation	from API CAM
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68373	17632 ChEBI	nitrate	+	reduction	from API CAM
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68373	17272 ChEBI	propionate	+	assimilation	from API CAM
68373	30031 ChEBI	succinate	+	assimilation	from API CAM
68373	78019 ChEBI	triphenyltetrazolium chloride	-	reduction	from API CAM
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68373	16199 ChEBI	urea	-	hydrolysis	from API CAM
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
68373	474053	cefazolin	224 µg	from API CAM
68373	48923	erythromycin	14 µg	from API CAM
68373	100147	nalidixic acid	84 µg	from API CAM

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68373	16136 ChEBI	hydrogen sulfide		from API CAM
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68373	alkaline phosphatase	+	3.1.3.1	from API CAM
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68373	catalase	+	1.11.1.6	from API CAM
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68373	esterase	+		from API CAM
68373	gamma-glutamyltransferase	-	2.3.2.2	from API CAM
68369	gelatinase	-		from API 20NE
68373	L-arginine arylamidase	-		from API CAM
68373	L-aspartate arylamidase	-	3.4.11.21	from API CAM
68373	pyrrolidonyl arylamidase	-	3.4.19.3	from API CAM
68373	urease	-	3.5.1.5	from API CAM
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
66411	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+

API CAM

@ref	URE	Reduction of nitrateNIT	EsteraseEST	HIP	GGT	TTC	PYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	PAL	H2S productionH2S	GLU	SUT	NAL	CFZ	ACE	PROP	MLT	CIT	Erythromycin resistance (+) sensitivity (-)ERO	CAT
66411	-	+	+	-	-	-	-	-	-	+	-	-	+	-	-	+	+	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Sewage sludge
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
66411	sewage of waste water treatment plant	Reus	Spain	ESP	Europe	41.1561	1.1069 41.1561/1.1069
118310	Environment, Sewage of a Waste Water Treatment Plant (WWTP)	Reus, Spain	Spain	ESP	Europe			2009-03-01

Taxonmaps

69479

Global distribution of 16S sequence NR_117570 (>99% sequence identity) for Arcobacter from Microbeatlas

Aquatic Samples	9375
Soil Samples	408
Animal Samples	847
Plant Samples	137
Total Samples	10767

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66411	1	Risk group (German classification)
118310	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1320193v1 assembly for Arcobacter cloacae LMG 26153	complete	GCA_013201935	1054034.9		1054034	93.28
66792	ASM411580v1 assembly for Arcobacter cloacae CECT 7834	contig	GCA_004115805	1054034.7	2873811608	1054034	46.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66411	Arcobacter cloacae strain SW28-13 16S ribosomal RNA, partial sequence	NR_117570	1402		1054034
66411	Arcobacter cloacae partial 16S rRNA gene, type strain SW28-13T	HE565360	1402		1054034

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Arcobacter cloacae LMG 26153
NCBI: GCA_013201935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.00	no
125439	motility	BacteriaNetⓘ	no	55.20	no
125439	spore_formation	BacteriaNetⓘ	no	91.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arcobacter cloacae LMG 26153
NCBI: GCA_013201935.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.81	no
125438	anaerobic	anaerobicⓘ	yes	50.09	no
125438	aerobic	aerobicⓘ	no	64.31	no
125438	spore-forming	spore-formingⓘ	no	92.38	no
125438	thermophilic	thermophileⓘ	no	86.14	yes
125438	flagellated	motile2+ⓘ	yes	75.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arcobacter cloacae sp. nov. and Arcobacter suis sp. nov., two new species isolated from food and sewage.	Levican A, Collado L, Figueras MJ	Syst Appl Microbiol	10.1016/j.syapm.2012.11.003	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66411	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111015
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68373	Automatically annotated from API CAM .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118310	Collection of Institut Pasteur ; Curators of the CIP; CIP 110784
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arcobacter cloacae (DSM 111015, CECT 7834, LMG 26153)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20NE

API CAM

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013201935

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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