Hornefia butyriciproducens (DSM 104962, WCA-MUC-591-APC-3H, JCM 34390)

Name: Hornefia butyriciproducens (DSM 104962, WCA-MUC-591-APC-3H, JCM 34390)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159457

Type strain

Strain Designation WCA-MUC-591-APC-3H

Culture col. no. DSM 104962 WCA-MUC-591-APC-3H JCM 34390

NCBI tax ID(s) 2652293

Special Collections DSMZ JCM Pig Literature strains DZIF

History DSMZ <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; JCM <-- B. Abt; DSMZ, Germany; DSM 104962 (=WCA-MUC-591-APC-3H) <-- T. Clavel; RWTH Aachen, Germany.

Links

Hornefia butyriciproducens WCA-MUC-591-APC-3H is an obligate anaerobe, other bacterium that was isolated from pig, APC, 33 weeks old, feces.

other obligate anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397598

JCM 34390,DSM 104962

@ref 20215

Last LPSN update 2026-05-29 08:44:12

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Peptostreptococcales

Family Anaerovoracaceae

Genus Hornefia

Species Hornefia butyriciproducens

Full scientific name Hornefia butyriciproducens Wylensek et al. 2021

Morphology

Cell morphology

@ref	Cell length	Cell shape
69645	1-3 µm	other

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66280	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)	Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
69645	Wilkins-Chalgren Anaerobe broth		supplemented with 18.5 g mucin
69645	Wilkins-Chalgren Anaerobe broth		supplemented with L-cysteine and DTT (0.05% and 0.02% (w/v), respectively)
69645	Gifu Anaerobic Medium, modi?ed		supplemented with Propionate (20mM), Acetate (45mM) and Pyruvate (1 mM)
69645	YCFA medium

Culture temp

@ref	Growth	Type	Temperature (°C)
66280	positive	growth	37
67770	positive	growth	37
69645	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	95.197
69645	obligate anaerobe

Observation

69645

ObservationDeconjugates primary bile acids

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69645	30089 ChEBI	acetate	+	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite
69645	17968 ChEBI	butyrate
69645	15740 ChEBI	formate
69645	30031 ChEBI	succinate

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
66280	pig, APC, 33 weeks old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of an APC^1311/+ pig	Freising	Germany	DEU	Europe
69645	Pig feces	Thalhausen, Bavaria	Germany	DEU	Europe	Wilkins-Chalgren Anaerobe broth	supplemented with 18.5 g mucin	7 days	37	anaerobic

Taxonmaps

69479

Global distribution of 16S sequence MN537475 (>99% sequence identity) for Hornefia porci subclade from Microbeatlas

Aquatic Samples	152
Soil Samples	235
Animal Samples	9398
Plant Samples	127
Total Samples	9912

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM969591v1 assembly for Hornefia butyriciproducens WCA-MUC-591-APC-3H	contig	GCA_009695915	2606707.3	2964298486	2652293	71.47

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66280	Hornefia butyriciproducens strain WCA-MUC-591-APC-3H 16S ribosomal RNA gene, partial sequence	MN537475	1461		2652293

GC content

@ref	GC-content (mol%)	Method
69645	51.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM969591v1 assembly for Hornefia butyriciproducens WCA-MUC-591-APC-3H
BV-BRC: 2606707.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.20	no
125439	motility	BacteriaNetⓘ	yes	66.07	no
125439	gram_stain	BacteriaNetⓘ	variable	59.13	no
125439	spore_formation	BacteriaNetⓘ	yes	62.14	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridiales Family XIII bacterium WCA-MUC-591-APC-3H
PATRIC: 2606707.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	65.67	no
125438	anaerobic	anaerobicⓘ	yes	88.56	no
125438	spore-forming	spore-formingⓘ	no	58.88	no
125438	aerobic	aerobicⓘ	no	98.66	yes
125438	thermophilic	thermophileⓘ	no	89.51	no
125438	flagellated	motile2+ⓘ	no	84.92	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66280	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104962
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#69645	David Wylensek, Thomas C. A. Hitch, Thomas Riedel, Afrizal Afrizal, Neeraj Kumar, Esther Wortmann, Tianzhe Liu, Saravanan Devendran, Till R. Lesker, Sara B. Hernández, Viktoria Heine, Eva M. Buhl, Paul M. D'Agostino, Fabio Cumbo, Thomas Fischöder, Marzena Wyschkon, Torey Looft, Valeria R. Parreira, Birte Abt, Heidi L. Doden, Lindsey Ly, João M. P. Alves, Markus Reichlin, Krzysztof Flisikowski, Laura Navarro Suarez, Anthony P. Neumann, Garret Suen, Tomas de Wouters, Sascha Rohn, Ilias Lagkouvardos, Emma Allen-Vercoe, Cathrin Spröer, Boyke Bunk, Anja J. Taverne-Thiele, Marcel Giesbers, Jerry M. Wells, Klaus Neuhaus, Angelika Schnieke, Felipe Cava, Nicola Segata, Lothar Elling, Till Strowig, Jason M. Ridlon, Tobias A. M. Gulder, Jörg Overmann, Thomas Clavel: A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat. Commun. 11: 2020 ( DOI 10.1038/s41467-020-19929-w )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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