Propioniciclava flava (DSM 100885, LMG 29089, WS 4900)

Name: Propioniciclava flava (DSM 100885, LMG 29089, WS 4900)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159196

Type strain

Strain Designation WS 4900, VG341

Culture col. no. DSM 100885 LMG 29089 WS 4900 VG341

NCBI tax ID(s) 2072026

Special Collections DSMZ Literature strains

History DSMZ <- M. Wenning, TU Munich, Freising-Weihenstephan, Germany; WS4900 <- F. Breitenwieser

Links

Propioniciclava flava WS 4900 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from Raw milk.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397841

LMG 29089,DSM 100885

@ref 20215

Last LPSN update 2026-05-29 08:44:08

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Propionibacteriaceae

Genus Propioniciclava

Species Propioniciclava flava

Full scientific name Propioniciclava flava (Wenning et al. 2020) Li et al. 2022

Synonyms (1)

Brevilactibacter flavus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
125438					95
125438	positive				90.456
69584	positive	0.8-2.2 µm	0.4-0.9 mm	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
69584	yellow to orange pigmented or white	3-5 days	Trypticase Soy Agar (TSA)

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66019	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
69584	Trypticase Soy Agar (TSA)

Culture temp

@ref	Growth	Type	Temperature (°C)
66019	positive	growth	30
69584	positive	growth	6-40
69584	positive	optimum	30-34

Culture pH

@ref	Ability	Type	PH
69584	positive	optimum	7.5
69584	positive	growth	5.5-8.5

Physiology and metabolism

Oxygen tolerance

69584

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		90.241
69584

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69584	NaCl	positive	growth	5 %
69584	NaCl	positive	optimum	1 %(w/v)

Observation

69584

ObservationThe polar lipid profile is composed of the major compounds diphosphatidylglycerol, phosphatidylglycerol and three unidentified glycolipids (GL1-3) and minor amounts of four unidentified glycolipids (GL4-7) and six unindentified lipids lacking a functional group (L1-6).

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69584	30089 ChEBI	acetate	+	anaerobic catabolization
69584	18305 ChEBI	arbutin	+	builds acid from
69584	28161 ChEBI	beta-D-xylose	+/-	builds acid from
69584	17057 ChEBI	cellobiose	+/-	builds acid from
69584	18333 ChEBI	D-arabitol	+	builds acid from
69584	15824 ChEBI	D-fructose	+	builds acid from
69584	12936 ChEBI	D-galactose	+	builds acid from
69584	17634 ChEBI	D-glucose	+	builds acid from
69584	16899 ChEBI	D-mannitol	+	builds acid from
69584	16024 ChEBI	D-mannose	+	builds acid from
69584	16988 ChEBI	D-ribose	+	builds acid from
69584	65327 ChEBI	D-xylose	+	builds acid from
69584	4853 ChEBI	esculin	+	hydrolysis
69584	15740 ChEBI	formate	+	anaerobic catabolization
69584	5291 ChEBI	gelatin	-	hydrolysis
69584	17754 ChEBI	glycerol	+	builds acid from
69584	35581 ChEBI	indole	-	fermentation
69584	24996 ChEBI	lactate	+	anaerobic catabolization
69584	17716 ChEBI	lactose	+	builds acid from
69584	17306 ChEBI	maltose	+	builds acid from
69584	6731 ChEBI	melezitose	+	builds acid from
69584	28053 ChEBI	melibiose	+	builds acid from
69584	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
69584	506227 ChEBI	N-acetylglucosamine	+/-	builds acid from
69584	17632 ChEBI	nitrate	+/-	reduction
69584	17272 ChEBI	propionate	+	anaerobic catabolization
69584	16634 ChEBI	raffinose	+/-	builds acid from
69584	17814 ChEBI	salicin	+	builds acid from
69584	28017 ChEBI	starch	-	hydrolysis
69584	30031 ChEBI	succinate	+	anaerobic catabolization
69584	17992 ChEBI	sucrose	+	builds acid from
69584	27082 ChEBI	trehalose	+	builds acid from
69584	32528 ChEBI	turanose	+	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
69584	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
69584	arginine dihydrolase	-	3.5.3.6
69584	beta-galactosidase	+	3.2.1.23
69584	catalase	+	1.11.1.6
69584	cytochrome oxidase	+	1.9.3.1
69584	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

69584

Fatty acid	Percentage
C15:0 anteiso	54
C16:0	8
C16:0 N alcohol	8
C17:0	6
C17:0 anteiso	5
C18:2 w6,9c / C18:0 anteiso	3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Fluids	#Milk
#Host	#Mammals	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
66019	Raw milk	Röttingen	Germany	DEU	Europe
69584	was raw cow milk.	southern Germany	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
69584	ASM412653v1 assembly for Propioniciclava flava VG341	contig	GCA_004126535	2072026.3	2866179177	2072026	72.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66019	Propioniciclava flava strain VG341 16S ribosomal RNA gene, partial sequence	MG799849	1366		2072026

GC content

@ref	GC-content (mol%)	Method
69584	67.7	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM412653v1 assembly for Propioniciclava flava VG341
BV-BRC: 2072026.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	75.04	no
125439	gram_stain	BacteriaNetⓘ	positive	83.21	no
125439	spore_formation	BacteriaNetⓘ	no	90.24	no
125439	motility	BacteriaNetⓘ	no	79.63	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Propionibacteriaceae bacterium VG341
PATRIC: 2072026.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.46	no
125438	anaerobic	anaerobicⓘ	no	73.96	yes
125438	spore-forming	spore-formingⓘ	no	72.77	no
125438	aerobic	aerobicⓘ	yes	60.34	yes
125438	thermophilic	thermophileⓘ	no	92.18	yes
125438	flagellated	motile2+ⓘ	no	95.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevilactibacter flavus gen. nov., sp. nov., a novel bacterium of the family Propionibacteriaceae isolated from raw milk and dairy products and reclassification of Propioniciclava sinopodophylli as Brevilactibacter sinopodophylli comb. nov.	Wenning M, Breitenwieser F, Huptas C, Doll E, Bachler B, Schulz A, Dunkel A, Hofmann T, von Neubeck M, Busse HJ, Scherer S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003909	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66019	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100885
#69584	Mareike Wenning, Franziska Breitenwieser, Christopher Huptas, Etienne Doll, Benedikt Bächler, Annika Schulz, Andreas Dunkel, Thomas Hofmann, Mario von Neubeck, Hans-Jürgen Busse and Siegfried Scherer: Brevilactibacter flavus gen. nov., sp. nov., a novel bacterium of the family Propionibacteriaceae isolated from raw milk and dairy products and reclassification of Propioniciclava sinopodophylli as Brevilactibacter sinopodophylli comb. nov.. IJSEM 70: 2020 ( DOI 10.1099/ijsem.0.003909 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Propioniciclava flava (DSM 100885, LMG 29089, WS 4900)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_004126535

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media