Name: Pseudolysinimonas yzui N7XX-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159176

Type strain:

Species: Pseudolysinimonas yzui

Strain Designation: N7XX-4

Culture col. no.: DSM 106791, JCM 32630, CGMCC 1.16548

Strain history: L. Mei; Yangzhou Univ., China; N7XX-4.

NCBI tax ID(s): 2708254 (species)

SI-ID 405273

DSM 106791

Section

Pseudolysinimonas yzui N7XX-4 is a mesophilic, Gram-positive bacterium that was isolated from cattail root of tailings.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Pseudolysinimonas*
	Species	**Pseudolysinimonas yzui**
	Full Scientific Name (LPSN)	Pseudolysinimonas yzui (Mei et al. 2020) Lee et al. 2021

Synonym

Lysinimonas yzui

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65999]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #65999]

Culture medium growth

[Ref.: #65999]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65999]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65999]			growth	30 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #65999]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-12(H₂), MK-11(H₂), MK-13(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65999]	Sample type/isolated from	cattail root of tailings
[Ref.: #65999]	Host species	Typha
[Ref.: #65999]	Geographic location (country and/or sea, region)	Anhui province, tongling city, phoenix mountain
[Ref.: #65999]	Country	China
[Ref.: #65999]	Country ISO 3 Code	CHN
[Ref.: #65999]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Cattail root on mine tailings from Phoenix Mountain
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tongling City, Anhui Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Root (Rhizome)
#Host	#Plants	#Shrub (Scrub)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65999]	Lysinimonas sp. strain N7XX-4 16S ribosomal RNA gene, partial sequence	MG934573	1487	ENA	2708254 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudolysinimonas yzui CGMCC 1.16548	GCA_014653215	contig	GenBank	2708254 tax ID	*
[Ref.: #66792]	Lysinimonas yzui strain CGMCC 1.16548	2708254.3	wgs	PATRIC	2708254 tax ID	*

[Ref.: #67770]	GC-content	67 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	69 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lysinimonas yzui strain CGMCC 1.16548 PATRIC: 2708254.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lysinimonas yzui strain CGMCC 1.16548 PATRIC: 2708254.3
[Ref.: #69480]	motile	no	88.409	no
[Ref.: #69480]	gram-positive	yes	93.64	no
[Ref.: #69480]	anaerobic	no	99.402	no
[Ref.: #69480]	halophile	no	91.159	no
[Ref.: #69480]	spore-forming	no	92.803	no
[Ref.: #69480]	glucose-util	yes	84.641	no
[Ref.: #69480]	aerobic	yes	95.082	no
[Ref.: #69480]	flagellated	no	97.977	no
[Ref.: #69480]	thermophile	no	98.069	yes
[Ref.: #69480]	glucose-ferment	no	90.576	no

Availability in culture collections External links

[Ref.: #65999]

Culture collection no.

DSM 106791, JCM 32630, CGMCC 1.16548

[Ref.: #111679]

SI-ID 405273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Protaetiibacter larvae sp. nov. and Agromyces intestinalis sp. nov., isolated from the gut of larvae of Protaetia brevitarsis seulensis, reclassification of Lysinimonas yzui as Pseudolysinimonas yzui comb. nov. and emended description of the genus Pseudolysinimonas.	Lee SA, Heo J, Kim MA, Tamura T, Saitou S, Kwon SW, Weon HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004669	2021	*
Phylogeny	Lysinimonas yzui sp. nov., isolated from cattail root soil from mine tailings.	Mei L, Piao Z, Hu J, Shi L, Bai Y, Yin S	Int J Syst Evol Microbiol	10.1099/ijsem.0.004013	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65999

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106791

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111679

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405273.1 )

* These data were automatically processed and therefore are not curated

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Lysinimonas yzui strain CGMCC 1.16548

Lysinimonas yzui strain CGMCC 1.16548

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