Tissierella pigra (DSM 105185, WCA3-693-APC-4alpha, JCM 34367)

Name: Tissierella pigra (DSM 105185, WCA3-693-APC-4alpha, JCM 34367)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159074

Type strain

Strain Designation WCA3-693-APC-4alpha

Culture col. no. DSM 105185 WCA3-693-APC-4alpha JCM 34367

NCBI tax ID(s) 2607614

Special Collections DSMZ JCM Pig DZIF

History <- T. Clavel , TU Munich, Freising-Weihenstephan, Germany; WCA3-693-APC-4alpha B. Abt; DSMZ, Germany; DSM 105185 (=WCA3-693-APC-4α) <-- T. Clavel; RWTH Aachen, Germany.

Links

Tissierella pigra WCA3-693-APC-4alpha is a human pathogen that was isolated from pig, APC, 24 weeks old, feces.

human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399482

JCM 34367,DSM 105185

@ref 20215

Last LPSN update 2026-02-09 11:38:30

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Tissierellales

Family Tissierellaceae

Genus Tissierella

Species Tissierella pigra

Full scientific name Tissierella pigra Wylensek et al. 2021

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65897	WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)		Medium recipe at MediaDive	Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65897	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Mammals	#Suidae (Pig,Swine)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65897	pig, APC, 24 weeks old, feces	Kranzberg (Bavaria)	Germany	DEU	Europe
67770	Feces of an APC^1311/+ pig	Freising	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
65897			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM969560v1 assembly for Tissierella pigra WCA3-693-APC-4	contig	GCA_009695605	2607614.3	2890571420	2607614	52.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65897	Tissierella pigra strain WCA3-693-APC-4 16S ribosomal RNA gene, partial sequence	MN537478	1474		2607614

GC content

@ref	GC-content (mol%)	Method
67770	36.9	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tissierella sp. DSM 105185 strain WCA3-693-APC-4?
PATRIC: 2607614.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	60.40	no
125439	motility	BacteriaNetⓘ	yes	72.80	no
125439	gram_stain	BacteriaNetⓘ	positive	73.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tissierella sp. DSM 105185 strain WCA3-693-APC-4?
PATRIC: 2607614.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.52	no
125438	anaerobic	anaerobicⓘ	yes	88.46	no
125438	spore-forming	spore-formingⓘ	yes	66.77	no
125438	aerobic	aerobicⓘ	no	90.77	no
125438	thermophilic	thermophileⓘ	no	84.69	no
125438	flagellated	motile2+ⓘ	yes	73.24	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Directed Recovery and Molecular Characterization of Antibiotic Resistance Plasmids from Cheese Bacteria.	Florez AB, Vazquez L, Rodriguez J, Mayo B.	Int J Mol Sci	10.3390/ijms22157801	2021
Phylogeny	A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity.	Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T.	Nat Commun	10.1038/s41467-020-19929-w	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65897	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105185
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Tissierella pigra (DSM 105185, WCA3-693-APC-4alpha, JCM 34367)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_009695605

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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